Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g60 ATGGACGATAACGACAATCCCGATCCGGGAAACGATTTCTCCGGAGACTCGAGCTGGACACTGGGAGCTGAGTCCGACAGTGTCTACTTCTTCGGCAGTGATAAGGAGAGCAGTATTCTGAGCGAGTTTGGGTGGAATCTGCAGCCGGAGGAGGCACACCACAGGAGTCTCGAGCCGGAGAGGTTCGGTGACGTGGAGCGGATCGAGACGCAAATCGGATCGGCGGAGAAAGCTGGTGACGCGTCGACGTCGAATCCGTCTGTGTCTTCGAGCTCCAGCGAGGATCCGCCGGAGAAGTCGACGGGGTCCGGCGGCGGGAAGCCTCCTGAAATACCGAGTAAAGGGCGGAAGAAGGGGCAAAAGCGAATTAGGCAGCCGCGCTTTGCGTTTATGACCAAGAGTGAAGTTGATCATCTTGAAGACGGCTATCGCTGGCGGAAGTATGGACAAAAGGCTGTTAAAAATAGTCCTTTTCCTAGGAGCTATTACCGGTGCACAAACAGCAAATGCACGGTGAAGAAAAGAGTTGAACGCTCCTCGGAGGATCCCAGCATCGTAATCACTACATATGAAGGCCAACACTGTCATCATACAGTTGGATTCCCCCGCGGTGGAGTCATTAGTCAAGAGGTTACCTTTGATGGCCGTATGACCCCTCCATTAACATCACACTTTTATTATCCAGATATGTCGTTCCACCGTGAAGTTTCTCATAGTGGTAGCATGGCACAGTCACACCAAGTCCCAGCCCAAGCTAGAGAAGCACGCGCACTGGCTGAGCCAAGCCCACAGCTTCCCACTGATGAAGGACTGCTTGGGGACATGGTGCCTCCTGGAATGCGCAATGGATGA 852 53.52 MDDNDNPDPGNDFSGDSSWTLGAESDSVYFFGSDKESSILSEFGWNLQPEEAHHRSLEPERFGDVERIETQIGSAEKAGDASTSNPSVSSSSSEDPPEKSTGSGGGKPPEIPSKGRKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTNSKCTVKKRVERSSEDPSIVITTYEGQHCHHTVGFPRGGVISQEVTFDGRMTPPLTSHFYYPDMSFHREVSHSGSMAQSHQVPAQAREARALAEPSPQLPTDEGLLGDMVPPGMRNG* 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 628681 633595 - Vvi1g60 Vvi1g60 769260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g60 283 PANTHER WRKY TRANSCRIPTION FACTOR 57-RELATED 3 212 - -
Vvi1g60 283 SMART WRKY_cls 139 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi1g60 283 ProSiteProfiles WRKY domain profile. 134 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi1g60 283 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 3 212 IPR044810 GO:0003700
Vvi1g60 283 SUPERFAMILY WRKY DNA-binding domain 131 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi1g60 283 MobiDBLite consensus disorder prediction 76 99 - -
Vvi1g60 283 Gene3D WRKY domain 126 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi1g60 283 MobiDBLite consensus disorder prediction 51 127 - -
Vvi1g60 283 Pfam WRKY DNA -binding domain 140 196 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi1g60 283 MobiDBLite consensus disorder prediction 237 283 - -
Vvi1g60 283 MobiDBLite consensus disorder prediction 51 73 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g60 Vvi17g566 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14523 PF03106 WRKY 1.10E-25 CL0274 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g60 - - vvi:100262937 538.88