Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g601 ATGAAGCTCTTTGAGGTTACACTTACAGAACCTCTGAAAGAGAGCCTAAAGCAGTCATGGTATGCTGGATTTGTCCTATCTCTCTCTCAGCTCCTAACTACTGCCAACACAGTGGCATGGAGAGGATTGTTATATCATAATGAGATTCCATACGAGCATCTATTTCCGACATTCTTCATATTGGTGACAACAGGGGAGAGAGGATTGAGGCCTGGAGGTCTGTTTTACGTAGCATTCGATATGGGGAGGAAAGGTGGGATGTTCCGCTATGCCAATGGCATAGACATGTTGCTGATGCTGCTTGGAACTCTGGGTAGCATTGGAGATGGCTTGATGTCACCGCTCACCATGCTCGTTCTCAGTGATGTGATCAACAAGTATGGAGATGTTGACCCATCTTTCTCCATCCAAGTGGTGGACAAGGTGCGCCTAGACTACTGTCTCCTTTTTACAGCACTCACTCTGGCTGTTCTGTGTTGCTATTGGAAAGGAATTTGCTGGACAAGAACATCAGAGAGGCAGACATCCCGCATGAGAATGGAATACCTAAAGTCAGTCCTCAGGCAAGAAGTTGGTTTCTTTGACAAACAAGCTGCTTCTTCTACTACCTTCCAAGTCATATCCACCATCTCTTCTGATGCGCATTCAATCCAAGATGTTATATCTGAGAAGATACCCAACTGCTTGGCTCACCTCTCATCATTCATCTTCTGCCTCATAGTTGCCTTCTTTCTTTCTTGGCGATTGGCAGTTGCTGCTCTTCCGTTCTCGCTAATGTTCATCATTCCAGGGGTAGGATTTGGAAAGCTAATGATGAACCTGGGGATGAAGATGAAGGTAGCTTATGGGGTTGCAGGTGAGATTGCAGAGCAAGCAATCTCATCAGTCCGAACAGTTTATTCTTATGCGGGGGAGTGTCAAACTCTAGACAGGTTCAGCCATGCCCTTCAAAAAAGTATGAAGCTTGGCATAAAGCTAGGATTCACAAAGGGGCTGTTGATAGGAAGTATGGGAACGATTTATGCAGCTTGGGCTTTTCAGGCTTGGGTTGGGACTATTCTTGTTACTGAGAAAGGAGAGGGAGGTGGCTCTGTTTTCATTTCTGGAGTCTGCAACTCACAATCTCAATCTCGCAACTTCAGGTCTATTATGAATGCACTCCCAAATCTCTCTTTCATCTTAGAGGCAACAGCTGCAGCCACCCGAATTTTTGAGATCACTGACCGGATTCCAGAAATAGACTCTGAAAATGAAAAAGGGAAAATTCTTGCATATGTGAGAGGAGAAATTGAATTTAAAGAGGTTGAATTCAGTTACCCATCAAGACCCACTACCAAGATTCTTCAAGGGTTCAATCTTAAAGTGAAAGCTGGTAAAACAGTAGGCCTTGTTGGAGGTAGTGGTTCGGGCAAATCCACAATCATTTCCTTGCTTGAAAGATTCTATGACCCTAATATTCTGTTTGGCAAAGAAGGAGCTCCATTGGAACTTGTTGTAAGAGCAGCTAAGGCAGCAAATGCCCATGGTTTCATCTCCAAATTGCCTCAAGGATATGAAACTCAAGTTGGGCAATTTGGAATTCAGTTGTCTGGAGGGCAAAAGCAAAGGATTGCCATTGCAAGGGCTTTAATAAGAGACCCAAGAATCCTTCTTCTTGATGAAGCTACAAGCGCTTTGGATGCAGAGTCTGAAAGAATAGTACAGGAAGCACTGGATCAAGCTTCCTTAGGAAGGACAACAATCATGATTGCCCATCGCCTCTCGACGATCCATAAGGCCGACATAATAGTGGTTCTTCAATCAGGAAGAGTGGTTGAATCGGGTTCTCACAATGATCTGATCCAGATGAACAATGGACAAGGAGGGGCCTATAGCAGAATAACGATGACATTTTCCATTAGCATGGCACCCTCCATCCAACTGCATTCCTACGATGAAAGCTTGATTGGGTGTATAGGGGCTGCAATTGGGTGGTTCGATCAAGATGAGAATACAAGTGCAGCCATCTGTGCACGGTTAGCCACTGAAGCCAACATGGTTCGGTCGCTGATTGGAGATCGTATATCATTGCTGGTTCAGGTTTTCTTCACCACAATGGAAGGCCCCAAGAAGGAGAATATCAAACAGTCATGGATTTCAGGCTTTGGTCTCTTCAGCTCACAGTTTCTGACAACAGCCTCTATAGCTTTGACTTACTGGTATGGAGGGAGGCTAATGATTCATGGATTAATAACCCCAAAGCACCTATCTGTTTTTGCAATCCTAGACAGGCAAAGTAAGATTGAACCTGAAGATCCAGAAAGAATCATGGTTAACAAGGCAATTAAGGGCTGCATAGAACTCAAGAACGTATTCTTCTCATACCCAACAAGGCCTGACCAAATGATCTTCAAGGGGCTCTCTCTCAGAATTGAAGCTGGTAAAACAGCTGCACTTGTGGGAGAGAGTGGTTCAGGAAAATCCACTGTCATTGGGCTGATTGAGAGGTTCTATGACCCACTCAACGGATCAGTACAGATAGATCAACATGACATCAGGAGCTATAATTTGAGAAAACTGAGGTCACATATTGCCTTGGTGAGTCAGGAGCCCATTCTCTTTGCAGGAACCATCTATGAGAACATTGTTTATGGGAAAGAGAATGCTACAGAAGCTGAAATAAGGAGGGCTGCACTTCTTGCTAATGCTCACGAATTTATAAGTTCTATGAAAGATGGATACAAAACTTACTGTGGAGAAAGAGGAGTCCAGCTATCAGGGGGCCAGAAGCAAAGGATAGCACTCGCTCGAGCAATATTGAAGAACCCGGCAATCATTCTTTTAGACGAGGCAACCAGTGCCCTTGACAGTATGTCAGAAAATCTAGTTCAAGAAGCTCTGGAGAAGATGATGGTTGGCAGGACTTGTGTAGTTGTAGCTCACCGGTTATCCACAATACAGAAGTCGGACACCATAGCTGTGATAAAGAATGGGAAGGTTGTGGAACAAGGCTCCCATTCTGATCTACTTGCTGTTGGACATGGCGGGACTTACTACTCTTTAATAAAGCTACAGGGCAATCATTCTCCTTATCGGTGA 3078 44.44 MKLFEVTLTEPLKESLKQSWYAGFVLSLSQLLTTANTVAWRGLLYHNEIPYEHLFPTFFILVTTGERGLRPGGLFYVAFDMGRKGGMFRYANGIDMLLMLLGTLGSIGDGLMSPLTMLVLSDVINKYGDVDPSFSIQVVDKVRLDYCLLFTALTLAVLCCYWKGICWTRTSERQTSRMRMEYLKSVLRQEVGFFDKQAASSTTFQVISTISSDAHSIQDVISEKIPNCLAHLSSFIFCLIVAFFLSWRLAVAALPFSLMFIIPGVGFGKLMMNLGMKMKVAYGVAGEIAEQAISSVRTVYSYAGECQTLDRFSHALQKSMKLGIKLGFTKGLLIGSMGTIYAAWAFQAWVGTILVTEKGEGGGSVFISGVCNSQSQSRNFRSIMNALPNLSFILEATAAATRIFEITDRIPEIDSENEKGKILAYVRGEIEFKEVEFSYPSRPTTKILQGFNLKVKAGKTVGLVGGSGSGKSTIISLLERFYDPNILFGKEGAPLELVVRAAKAANAHGFISKLPQGYETQVGQFGIQLSGGQKQRIAIARALIRDPRILLLDEATSALDAESERIVQEALDQASLGRTTIMIAHRLSTIHKADIIVVLQSGRVVESGSHNDLIQMNNGQGGAYSRITMTFSISMAPSIQLHSYDESLIGCIGAAIGWFDQDENTSAAICARLATEANMVRSLIGDRISLLVQVFFTTMEGPKKENIKQSWISGFGLFSSQFLTTASIALTYWYGGRLMIHGLITPKHLSVFAILDRQSKIEPEDPERIMVNKAIKGCIELKNVFFSYPTRPDQMIFKGLSLRIEAGKTAALVGESGSGKSTVIGLIERFYDPLNGSVQIDQHDIRSYNLRKLRSHIALVSQEPILFAGTIYENIVYGKENATEAEIRRAALLANAHEFISSMKDGYKTYCGERGVQLSGGQKQRIALARAILKNPAIILLDEATSALDSMSENLVQEALEKMMVGRTCVVVAHRLSTIQKSDTIAVIKNGKVVEQGSHSDLLAVGHGGTYYSLIKLQGNHSPYR* 1026
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6877618 6883938 + Vvi1g601 Vvi1g601 769801

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g601 1025 Gene3D - 485 629 IPR027417 -
Vvi1g601 1025 Gene3D - 420 484 IPR027417 -
Vvi1g601 1025 Gene3D ABC transporter type 1, transmembrane domain 655 698 IPR036640 GO:0005524|GO:0016021
Vvi1g601 1025 Gene3D ABC transporter type 1, transmembrane domain 753 776 IPR036640 GO:0005524|GO:0016021
Vvi1g601 1025 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 692 755 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi1g601 1025 CDD ABC_6TM_Pgp_ABCB1_D1_like 106 403 - -
Vvi1g601 1025 ProSitePatterns ABC transporters family signature. 529 543 IPR017871 GO:0005524
Vvi1g601 1025 PANTHER OS04G0481700 PROTEIN 651 698 - -
Vvi1g601 1025 PANTHER OS04G0481700 PROTEIN 694 749 - -
Vvi1g601 1025 PANTHER OS04G0481700 PROTEIN 750 1020 - -
Vvi1g601 1025 PANTHER OS04G0481700 PROTEIN 91 484 - -
Vvi1g601 1025 PANTHER OS04G0481700 PROTEIN 485 628 - -
Vvi1g601 1025 PANTHER OS04G0481700 PROTEIN 1 66 - -
Vvi1g601 1025 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 618 IPR027417 -
Vvi1g601 1025 Pfam ABC transporter 798 946 IPR003439 GO:0005524
Vvi1g601 1025 Pfam ABC transporter 448 484 IPR003439 GO:0005524
Vvi1g601 1025 Pfam ABC transporter 505 557 IPR003439 GO:0005524
Vvi1g601 1025 Pfam ABC transporter transmembrane region 99 358 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi1g601 1025 ProSitePatterns ABC transporters family signature. 918 932 IPR017871 GO:0005524
Vvi1g601 1025 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 485 628 IPR039421 -
Vvi1g601 1025 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 750 1020 IPR039421 -
Vvi1g601 1025 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 66 IPR039421 -
Vvi1g601 1025 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 91 484 IPR039421 -
Vvi1g601 1025 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 694 749 IPR039421 -
Vvi1g601 1025 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 651 698 IPR039421 -
Vvi1g601 1025 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 430 626 IPR003439 GO:0005524
Vvi1g601 1025 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 100 366 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vvi1g601 1025 SUPERFAMILY ABC transporter transmembrane region 655 754 IPR036640 GO:0005524|GO:0016021
Vvi1g601 1025 Gene3D ABC transporter type 1, transmembrane domain 87 419 IPR036640 GO:0005524|GO:0016021
Vvi1g601 1025 CDD ABC_MTABC3_MDL1_MDL2 779 1018 - -
Vvi1g601 1025 SMART AAA_5 806 992 IPR003593 -
Vvi1g601 1025 SMART AAA_5 457 603 IPR003593 -
Vvi1g601 1025 SUPERFAMILY ABC transporter transmembrane region 87 412 IPR036640 GO:0005524|GO:0016021
Vvi1g601 1025 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 770 1018 IPR027417 -
Vvi1g601 1025 Gene3D - 777 1019 IPR027417 -
Vvi1g601 1025 Gene3D ABC transporter type 1, transmembrane domain 699 752 IPR036640 GO:0005524|GO:0016021
Vvi1g601 1025 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 779 1015 IPR003439 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g601 K05658 ABCB1, CD243; ATP-binding cassette, subfamily B (MDR/TAP), member 1 [EC:7.6.2.2] - fve:101309993 733.791
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g601 . . . . . . . . . . . . . . . . . . . . . . . . Cla05g02617 . . . . . . . Cone19ag1084 . . Lsi04g00630 Csa05g02257 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000338 3 4 5 4 3 4 2 4 4 4 4 4 7 4 4 8 4 5 4 4 4 4 6 4 4 4 7 6 4 8 136