Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g602 ATGTCCTTTCTCGTTCGCTCGGAACCTCGGACAAAACGTACCCTTCCCTCTCTCCACGTGGCAGGGCTTTACTTCTCCTTCGGTATCTATATAAATACACACGCTCACTCTTTCTTCGTCTCTCCCTCTCAATGCTATGGCGGCATGAGGGTCCGATCATGTCTACCCGCCTGGATCTCCACTGCCGATGACTCTGAGATTTCTCTTCCAGAAATCCAAAAATCGTTCCCCAAACTCTTCGCCTCCGATAATAGCAGGTCCCCTGAAATGTTGGGCAGCTTGTCGACCTCCGGAGAGACCAGCTGCGATAGTGGCCTCCAAAGCAGTCTTTCTCTCCAAACCCTGCCATCTGTTCCCTCACTCCAAAAACTCTCACCCGAAGCCCTAAACCTCTCCGTCTCTCACCTCTGCGTCGCCACTCTTAAGCCCCGCCCTGTCCACATCAATTGCCTTGCCGTCTCCGCCGACAGCCTCTATGCAGCTTCCGGCTATCAAATCCACGTCTTCGATTTGAAAAACTACGCTCACTTGGATGCATTTAACACTGATGATTCCTCTTCTGGCTCAGTGAAGTCCCTCGCTTTCTGCGACGGAAAAATTTTCACTTCTCACCAGAACGGCAAGATCCGAGTCTGGCAAATGACCATCAGTAAACGGCACCAGCTAGTGGCCACTCTCCCCACTGTTAATGACCGGTTACGACACTTCATGCTTCCGAAGAACTACGTAAGTGTCCGACGTCACAAGAAACGGCTCTGGATTGATCACGCTGACGCCGTTTCCGGCCTTTCTGTTTCAGACGGTTTCATCTGTTCCGTTTCTTGGGACAAGTGCTTCAAGATATGGCGAGCCTCCGATCTCCGCTGCCTGGAGTCTGTCAAGGCGCACCAAGACGCCGTTAACGCCGTCGCCATCTCCGGTAACGGAATTATATACACAGGATCGGCAGATTGCCGGATTAAGGTCTGGGCCAAAGCGTCAGGGGAGAAACGGCACACTGTGGTAGCCACCCTAGAGAAGCACAAATCGGCCGTCAATGCTTTAGCATTGACCGGCGACGGTTCGATCCTATTTTCGGGGGCTTGTGACCGTTCCATTCTGGTGTGGGAGAGGGAAGACAGCGCGAATCACATGGTGGTTACGGGGGCGTTGAGAGGGCACAGTAAGGCCATATTGTGCTTGATCAGCGTCTCTGATCTGCTCTTGAGTGGATCAGCTGATCGAACGGTCAGAATATGGCAACATGGAAGTGACGGACGTTACTGTTGCCTGAGCGTTTTGGAAGGACACGAGAAACCTGTGAAGGCGTTGGTGGCGGTTTCCGATGGGGAATCGAAGGTGGCCGGTGCAATCAGGGTATTTAGTGGCAGCCTTGACGGTGAGATTAAGGTGTGGCAGGTATCCGTTTCTAGTCACTATGGTCCCTTGACCCCGATTTTCTGA 1443 52.67 MSFLVRSEPRTKRTLPSLHVAGLYFSFGIYINTHAHSFFVSPSQCYGGMRVRSCLPAWISTADDSEISLPEIQKSFPKLFASDNSRSPEMLGSLSTSGETSCDSGLQSSLSLQTLPSVPSLQKLSPEALNLSVSHLCVATLKPRPVHINCLAVSADSLYAASGYQIHVFDLKNYAHLDAFNTDDSSSGSVKSLAFCDGKIFTSHQNGKIRVWQMTISKRHQLVATLPTVNDRLRHFMLPKNYVSVRRHKKRLWIDHADAVSGLSVSDGFICSVSWDKCFKIWRASDLRCLESVKAHQDAVNAVAISGNGIIYTGSADCRIKVWAKASGEKRHTVVATLEKHKSAVNALALTGDGSILFSGACDRSILVWEREDSANHMVVTGALRGHSKAILCLISVSDLLLSGSADRTVRIWQHGSDGRYCCLSVLEGHEKPVKALVAVSDGESKVAGAIRVFSGSLDGEIKVWQVSVSSHYGPLTPIF* 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6886456 6888175 + Vvi1g602 Vvi1g602 769802

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g602 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 379 IPR001680 GO:0005515
Vvi1g602 480 SUPERFAMILY WD40 repeat-like 136 468 IPR036322 GO:0005515
Vvi1g602 480 Gene3D - 374 475 IPR015943 GO:0005515
Vvi1g602 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 384 414 - -
Vvi1g602 480 PANTHER F21J9.19 64 472 - -
Vvi1g602 480 PRINTS G protein beta WD-40 repeat signature 357 371 IPR020472 -
Vvi1g602 480 PRINTS G protein beta WD-40 repeat signature 401 415 IPR020472 -
Vvi1g602 480 PRINTS G protein beta WD-40 repeat signature 453 467 IPR020472 -
Vvi1g602 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 293 333 IPR001680 GO:0005515
Vvi1g602 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 338 370 - -
Vvi1g602 480 CDD WD40 137 466 - -
Vvi1g602 480 ProSiteProfiles Trp-Asp (WD) repeats profile. 384 414 IPR001680 GO:0005515
Vvi1g602 480 Pfam WD domain, G-beta repeat 383 413 IPR001680 GO:0005515
Vvi1g602 480 Pfam WD domain, G-beta repeat 335 369 IPR001680 GO:0005515
Vvi1g602 480 Pfam WD domain, G-beta repeat 288 323 IPR001680 GO:0005515
Vvi1g602 480 Pfam WD domain, G-beta repeat 422 465 IPR001680 GO:0005515
Vvi1g602 480 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 64 472 IPR045182 -
Vvi1g602 480 SMART WD40_4 286 324 IPR001680 GO:0005515
Vvi1g602 480 SMART WD40_4 176 213 IPR001680 GO:0005515
Vvi1g602 480 SMART WD40_4 134 170 IPR001680 GO:0005515
Vvi1g602 480 SMART WD40_4 420 466 IPR001680 GO:0005515
Vvi1g602 480 SMART WD40_4 246 283 IPR001680 GO:0005515
Vvi1g602 480 SMART WD40_4 331 370 IPR001680 GO:0005515
Vvi1g602 480 SMART WD40_4 377 414 IPR001680 GO:0005515
Vvi1g602 480 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 293 323 - -
Vvi1g602 480 Gene3D - 128 373 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g602 - - - vvi:100249075 941.028
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g602 Vvi17g871 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g602 . . . . . . Bma14g01832 . . Cmo18g00721 . Cma18g00732 . Car18g00682 Sed06g1708 . . Bhi07g01834 Tan04g0134 Cmetu10g0004 Lac13g0117 Hepe10g1568 . . Cla05g02616 Cam05g2804 Cec05g2840 Cco05g2872 Clacu05g2808 Cmu05g2656 Cre05g2772 . Cone19ag1083 . . . Csa05g02258 Chy10g00828 . Blo06g00839 Blo11g01035 Bda07g01648 . . . . . . . Cmo15g00862 Cma04g01790 Cma15g00831 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49