Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g603 ATGGCAAACACGACCATCTCTGCCCAGATGCAGCAAAGCGTGAGTAACCGATTAATGTCAGCATCACTGATTGACAATCCAATCATGAATCAAATTCATTCCATCCATGCTTCAGATGGCTGCAGCCGCCACATTGACATGAAACCTCTTCTCCGCTTCACTGAGAACATCTTGCAAAATGCTCTGCCTACCACCATCGACACCCCTGCCACTCCTCAGGAAGCTCAAACACAACTCAATGAATTACTGGAGGATTACGACGGCCACTATGACTTCCTCAAGCTCTATCTCGCACAAATCATAAAGAGAACCTCCTGCAAGATATCATGCACGTGCGGTCAAAGTGCATATGCAGCGACCTTGGAGGTATTCAAGACACTTTCATCCTTCACCTGGGAGACCAAGGTGGTGCTTGCCCTAGCAGCTTTCTCTGTGACCTATGGTAAGTTTTGGCTGGTTGCCCAGCCATCTTCCACCAACTTACTCGCCAAATCAATTGCCATCCTTGAGCAATTACCAGACATGTTGGCGGATAAGGAGCCTTGGAAGCCAAAGTTTGAAGCGCCTAGCAACCTTATCAAGACAATTCTGAAAGTGACCAAGTGCGTAGTTGAGTTCTGGGAGCTTCTATCAGAATACATGACTGACGGGCGAGGAATGCCAACCGCGGCTGCTCATATTCCCACAGCTGTCTATTGGACCATCCATGGTATGGTGGTCTGCACAAAAAGAACCATGTGCCTTACAGACATGGGCCAAGAGGATATAGACCAAACAATGGAGGATTGGTACCTGTCCAGCTTGGACCACAAGCTCAGCCAGATACATGATTACCTTAAAGAGCAACTAGCTGTTTGCCGTCAACACATTCGTGAAAGGAGAGAGATTGAGGCATATAAAATGATTGAGCACCTCCTCAAGACTCCCCAAATTGATAACATGAAGATTCTTGGGGCTTTGATTTGCGCCAAGGCAGAGCAGCTGCCCCTATTTGATGGTTTAAACAAGAAAAGGGCTAGACTCGACGTACTGTGGAAGAAGAATGTGTTGCTATTCATTTCAGAGCTTGAAGTTCCCTACCAGGAGCTTTCCATTCTGGAAAAGATGTACCTAGAGTCAAGGCAGGATCCAACCAAAGAAGAGAGCCAGTACGAGGTCGTGTGGCTTCCAGTGGTTGATGGATCCACCCCACGGAATGAAGAGAAGGACAGGCATTTTGAGACTCAAAAAGCATTGATGACATGGTACGCTGTTTTTCACCCTTCACTGCTGGAAACAGCAGCCATCAAGTACATCAAGGAGGTGTGGGGCTTCAACAAGAGGCCGATGCTAGTGGCATTGGACCCAATGGGAAGAGTCGTCAACCCTAACGCTATCCACATGATTTACATTTGGGGCCCTACTGTTGCCTTCCCTTTCTCCAAGTCCAGGGAGGAAGGACTCTGGAAGGAAGTAACATGGGGCATTGAGCTACTGGCAGCCGCCATCCACCCAATGATAGTCGACTGGATCTCTGAAGGCAAATACATTTGCTTGTATGGAGGAGACGATATAGAGTGGATCCAGAGATTCACTGACGTTGCAAAAGCTGTTGAAAGCGCTGCAGATATCAAGTTGGAAATGCTCTATGTGGGCAAGAGCAACCTTAGGGAGAAAGTTCGGAAGAACAATGACAGCATTGCCCAGGAAAACCTGAGCCATGTACTGCCAGACCTAAGTTCAGTATGGTTCTTCTGGGCCCGGCTAGAAAGCATGTGGCACTCCAAGGTGCAGCATGGGGGGGAGAATGCAGAGAGAGATCCTATAATGCAGGAAATCGTGTCAATGCTTAGCTTTGACGGTGGGGATCATGGATGGGCTGTTTTCGGCAGGGGGACCCCGGATAGGGTAGCTTGCGCAGAGTGTGGCCGTCCTATGGAGAAATTTATCATGTATCGCTGCTGCACTGATTGA 1953 48.39 MANTTISAQMQQSVSNRLMSASLIDNPIMNQIHSIHASDGCSRHIDMKPLLRFTENILQNALPTTIDTPATPQEAQTQLNELLEDYDGHYDFLKLYLAQIIKRTSCKISCTCGQSAYAATLEVFKTLSSFTWETKVVLALAAFSVTYGKFWLVAQPSSTNLLAKSIAILEQLPDMLADKEPWKPKFEAPSNLIKTILKVTKCVVEFWELLSEYMTDGRGMPTAAAHIPTAVYWTIHGMVVCTKRTMCLTDMGQEDIDQTMEDWYLSSLDHKLSQIHDYLKEQLAVCRQHIRERREIEAYKMIEHLLKTPQIDNMKILGALICAKAEQLPLFDGLNKKRARLDVLWKKNVLLFISELEVPYQELSILEKMYLESRQDPTKEESQYEVVWLPVVDGSTPRNEEKDRHFETQKALMTWYAVFHPSLLETAAIKYIKEVWGFNKRPMLVALDPMGRVVNPNAIHMIYIWGPTVAFPFSKSREEGLWKEVTWGIELLAAAIHPMIVDWISEGKYICLYGGDDIEWIQRFTDVAKAVESAADIKLEMLYVGKSNLREKVRKNNDSIAQENLSHVLPDLSSVWFFWARLESMWHSKVQHGGENAERDPIMQEIVSMLSFDGGDHGWAVFGRGTPDRVACAECGRPMEKFIMYRCCTD* 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6907732 6911179 - Vvi1g603 Vvi1g603 769803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g603 650 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 626 650 IPR039299 GO:0010088
Vvi1g603 650 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 6 626 IPR039299 GO:0010088
Vvi1g603 650 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 626 650 - -
Vvi1g603 650 PANTHER PROTEIN SIEVE ELEMENT OCCLUSION B-LIKE 6 626 - -
Vvi1g603 650 Pfam Sieve element occlusion N-terminus 25 309 IPR027942 -
Vvi1g603 650 Pfam Sieve element occlusion C-terminus 476 626 IPR027944 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g603 - - - vvi:100266247 1273.07
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g603 Vvi14g1258 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g603 . . . Bda11g01298 Bpe13g01492 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01298 . . . Bma06g00593 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005147 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 3 1 4 41