Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g606 ATGGTTGGAAGGATTGTTATCTCTGCAGTAGACTGGGTGGTTCATCATATATGGTTTTCTGACATAGCTGTGGCTTTGTCGAGCATATTCATCTTCAGTTCTATACTTCATAGACTCACCAACAAAGGTCCCATGTTATGGCCGGTGATGGGAATCATACCAACAGTATTCTTCCACATGAACGACATCTACAATTGGGGAACCAGAGTTCTGATCCGAGCTGGGGGGACATTCTACTATAGGGGAATGTTCAAGAACTTCCCCAAAGGCAATTACTATAGAGAGAGGTTCAATGATTTGCTCGGGGGTGGCATTTTCAATGCAGATGATGAATCATGGAAGGAGCAAAGGCGACTTGCGACTTTTGAGATGCATTCGGGTCCGTTCGTGGCGCACTCGTTTCAGACCATACAAGGTTTGGTGCACCAGAAGCTGTTGAAACTGATAGAGAAGCTGGCAAAGTCAGGAGATTCCACGGAATCAACACTGTTCAGGTTCATTGTGCCTCCTTTTGTGTGGAAGCCCATGAGGTTCTTTAGAGTAGGAACTGAGAAGCGGCTCAAGGAAGCAGTGCGAATTCTTCATCTTAGCTGGGCGAGACACGAGCTCTTGGAAGAACTAAAGAAGATGGTGTATCTGCAAGCGGCCTTAACAGAGTCCCTGCGGCTCTACCCATCTGTGCCAATCGACTTCAAAGAGGTTATGGAAGATGACGTGTTCCCAGACGGCACACCCATCAAACGTGGGGCCAGGGTCCTCTACTCCATCTTCTCCATGGCTCGAATCGAGTCCATATGGGGGAAAGACTGCATGGAGTTCAAGCCAGAGAGGTGGATCAAAGACGGGGAGCTTGTGAGTGAGAATCAGTTTAAGTATCCAGTGTTTAATGCTGGACCCAGGCTTTGCATAGGGAAAAAGTTTGCCTACATGCAGATGAAAATGGTGGCTGCTTCGATCCTGATGAGGTACTCGGTTAAGGTTGTTGAAGGTCATAACGTTATTCCCAAAATGACAACCACACTCTACATGAAGAATGGCTTATTGGTGACTTTCAAGCCTAGTTGTAGCAGTGGGAGGAAAACAAATGGACGTACGTCTTCGTTTGCTCTCGTGTTGTACAATATATATGAACTAATGAATTTTACACATCAAGTTTGTACGTACAATGTGAAATTTAACTAA 1182 45.69 MVGRIVISAVDWVVHHIWFSDIAVALSSIFIFSSILHRLTNKGPMLWPVMGIIPTVFFHMNDIYNWGTRVLIRAGGTFYYRGMFKNFPKGNYYRERFNDLLGGGIFNADDESWKEQRRLATFEMHSGPFVAHSFQTIQGLVHQKLLKLIEKLAKSGDSTESTLFRFIVPPFVWKPMRFFRVGTEKRLKEAVRILHLSWARHELLEELKKMVYLQAALTESLRLYPSVPIDFKEVMEDDVFPDGTPIKRGARVLYSIFSMARIESIWGKDCMEFKPERWIKDGELVSENQFKYPVFNAGPRLCIGKKFAYMQMKMVAASILMRYSVKVVEGHNVIPKMTTTLYMKNGLLVTFKPSCSSGRKTNGRTSSFALVLYNIYELMNFTHQVCTYNVKFN* 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6936327 6938135 + Vvi1g606 Vvi1g606 769806

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g606 393 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 295 304 IPR017972 GO:0005506|GO:0016705
Vvi1g606 393 PRINTS E-class P450 group IV signature 210 226 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g606 393 PRINTS E-class P450 group IV signature 261 279 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g606 393 PRINTS E-class P450 group IV signature 286 302 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g606 393 PRINTS E-class P450 group IV signature 302 320 IPR002403 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g606 393 Pfam Cytochrome P450 204 341 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g606 393 SUPERFAMILY Cytochrome P450 42 353 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g606 393 Gene3D Cytochrome P450 182 353 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g606 393 Gene3D Cytochrome P450 32 169 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g606 393 PANTHER CYTOCHROME P450, FAMILY 86, SUBFAMILY C, POLYPEPTIDE 1 201 355 - -
Vvi1g606 393 PANTHER CYTOCHROME P450, FAMILY 86, SUBFAMILY C, POLYPEPTIDE 1 157 195 - -
Vvi1g606 393 PANTHER CYTOCHROME P450, FAMILY 86, SUBFAMILY C, POLYPEPTIDE 1 11 154 - -
Vvi1g606 393 PANTHER CYTOCHROME P450 201 355 - -
Vvi1g606 393 PANTHER CYTOCHROME P450 157 195 - -
Vvi1g606 393 PANTHER CYTOCHROME P450 11 154 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g606 - - - vvi:100250807 365.925
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g606 . Blo16g01177 . Bda11g01296 Bpe13g01490 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01296 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016623 1 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 2 7