Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g61 ATGGCAGCTTCACCATTCTCTGCAACCTCCACTCAAACTAGTCCATTTTCACATTCCAATTCCTTCTCAAGCTTCTTAGGCTTCAAATGCAGAAGCAGGCATTCATGGCCCTTCTTCATTAGGACCTCCAGTACCTGGCATTCCAGAAGGAGCTTGTCTATCATCAGGAGTGTGGCTAGCAATCAGAAGCAGACTTTGAAGGATCCTCCCACCCAAGAAGATGGTCTTGATTCATTTGCACCAGATTCAGCATCAATAGCTTCAAGCATCAAGTACCATTCAGAATTCACGCCGTTGTTCTCCCCCGGACGGTTTGAGCTCCCCAAGGCATACCTTGCAACTGCACAAAGTGTTCAGGATATGCTTATCATAAATTGGAATGCTACATATGATTATTATGAGAAAATGAATGTAAAGCAGGCATATTACTTGTCAATGGAGTATTTACAGGGTAGAGCTTTGCTAAATGCCATAGGCAATTTAGAGCTTTCTGGGCCTTACGCAGAGGCATTGAGAAAGCTTGGGCATAATCTGGAGGATGTAGCTAGTCAGGAACCAGATGCTGCCCTTGGGAATGGGGGACTAGGAAGGCTTGCTTCCTGCTTCCTGGACTCCCTGGCAACACTAAATTATCCGGCTTGGGGCTATGGACTTAGATATAAGTATGGCTTGTTCAAACAGCTCATCACAAAAGATGGTCAGGAGGAAGTTGCAGAAAATTGGCTTGAAATGGGTAATCCTTGGGAAATTGTGAGGAATGATGTCTCCTACCCTGTGAAGTTCTATGGCAAAGTTATCGAAGGCCCGGATGGAAAGAAAGAATGGATTGGAGGAGAAGACATAACTGCTGTTGCTTATGATGTCCCCATACCGGGATATAAAACTAAAACAACAATAAACCTTCGATTATGGTCTACAAAATTGGCATCAGAAGCTTTTGATTTACAGGCTTTTAATACTGGAGATCATGCCAAAGCAAACAAGGCTCAAAAAGATGCTGAAAAGATTTGCTATGTATTATACCCTGGGGATGAGTCAATAGAGGGAAAAACTCTTCGTTTGAAGCAACAATATACATTATGCTCTGCCTCTCTCCAAGATATTATCAGACGATTTGAAAGGAGATCAGGAGGACCTGTGAACTGGGAAAATTTTCCTGAAAAGGTTGCTGTGCAGATGAATGATACTCATCCAACACTCTGCATACCCGAGCTGATAAGAATATTGATGGATGTGAAGGGATTGAGCTGGAAGGAAGCATGGGATATCACTCAAAGAACTGTGGCATACACAAACCATACTGTTCTGCCTGAGGCACTGGAGAAATGGAGTTTGAATCTTTTGAAGGAGTTGCTTCCTCGCCATGTTCAGATCATAGAAATGATTGATGAGGAGCTGATTCAAACCATAACTTCCGAGTATGGAGTGGAGGATCTAGACTTGTTGCAGCAAAAATTGAAACAAATGAGGATCTTGGACAATGTTGAGTTACCTTCCTCAGTCTTAGAATTGCTTGTTAAATCAGAAGAAAAAGGTCCTGCGGTTGATACAATTGAAGAAACTGAAACTTCAAATGAAGGAATAAAACCTAAGATGGTTCGTATGGCTAATCTGTGTGTAGTTGGTGGCCGAGCAGTCAATGGGGTTGCTGAGATTCATAGTGAAATAGTAAAAACCGATGTTTTTAATGATTTCTATGGGTTGTGGCCAGAGAAATTTCAAAACAAAACAAATGGGGTGACACCAAGAAGATGGATTCGCTTTTGCAATCCCGATCTTAGTAACATCATAACCAAGTGGACTGGAACAGAAGATTGGGTTATAAACACTGAGAAGTTGGCAGAACTAAGAAAATTTGCTGATAATGAGGATCTCCAATCTGAATGGAGGGAAGCAAAAAGGAGAAACAAGATAAAGGTTGTGTCATTCCTGAAAGAAAAAACCGGATATCTTGTCAGCCCAGACGCGATGTTTGATGTACAGGTGAAGCGCATCCATGAGTACAAGCGTCAATTGTTGAATATCATGGGAATTGTCTATCGCTACAAAAAAATGAAAGAAATGAGCCCTGATGAGAGAAAAGCCAACTTTGTTCCTCGAGTATGCATATTTGGAGGAAAAGCATTTGCCACATATGTCCAGGCTAAGAGAATTGTGAAATTCATCACTGATGTAGGGGCTACAGTCAACCATGATCCTGACATAGGTGATCTTTTGAAGGTCGTCTTTGTCCCTGATTACAATGTCAGTGTTGCAGAAGTGCTTATACCTGGTAGTGAGCTGTCCCAGCATATCAGCACGGCTGGAATGGAAGCCAGTGGAACCAGCAACATGAAGTTTGCTATGAATGGCTGCATCCTGATTGGAACCTTAGATGGTGCTAATGTTGAGATAAGGGAAGAGGTAGGAGAAGACAACTTTTTCCTTTTTGGCGCTCGGGCTGATGAGATTGCAGGGCTAAGAAAAGAAAGAGCTGAGGGGAAGTTTGTGCCCGACCCTCGATTTGAAGAAGTGAAGGCATACGTCAGGAGTGGTGTTTTTGGCCCCTACAACTATGAAGAACTGATGGGATCCCTGGAAGGGAATGAAGGCTATGGGCGTGCTGATTACTTCCTTGTTGGCAAGGACTTCCCTAGCTACATAGAGTGCCAGGAGAAGGTTGATGAGGCATACCGAGACCAGAAAAAATGGACAAAAATGTCAATCCTGAACACGGCTGGTTCATACAAGTTCAGCAGTGACCGAACAATTCATGAATACGCGAGACACATATGGATGATCGATCCTATTGTAATACCATAA 2802 42.79 MAASPFSATSTQTSPFSHSNSFSSFLGFKCRSRHSWPFFIRTSSTWHSRRSLSIIRSVASNQKQTLKDPPTQEDGLDSFAPDSASIASSIKYHSEFTPLFSPGRFELPKAYLATAQSVQDMLIINWNATYDYYEKMNVKQAYYLSMEYLQGRALLNAIGNLELSGPYAEALRKLGHNLEDVASQEPDAALGNGGLGRLASCFLDSLATLNYPAWGYGLRYKYGLFKQLITKDGQEEVAENWLEMGNPWEIVRNDVSYPVKFYGKVIEGPDGKKEWIGGEDITAVAYDVPIPGYKTKTTINLRLWSTKLASEAFDLQAFNTGDHAKANKAQKDAEKICYVLYPGDESIEGKTLRLKQQYTLCSASLQDIIRRFERRSGGPVNWENFPEKVAVQMNDTHPTLCIPELIRILMDVKGLSWKEAWDITQRTVAYTNHTVLPEALEKWSLNLLKELLPRHVQIIEMIDEELIQTITSEYGVEDLDLLQQKLKQMRILDNVELPSSVLELLVKSEEKGPAVDTIEETETSNEGIKPKMVRMANLCVVGGRAVNGVAEIHSEIVKTDVFNDFYGLWPEKFQNKTNGVTPRRWIRFCNPDLSNIITKWTGTEDWVINTEKLAELRKFADNEDLQSEWREAKRRNKIKVVSFLKEKTGYLVSPDAMFDVQVKRIHEYKRQLLNIMGIVYRYKKMKEMSPDERKANFVPRVCIFGGKAFATYVQAKRIVKFITDVGATVNHDPDIGDLLKVVFVPDYNVSVAEVLIPGSELSQHISTAGMEASGTSNMKFAMNGCILIGTLDGANVEIREEVGEDNFFLFGARADEIAGLRKERAEGKFVPDPRFEEVKAYVRSGVFGPYNYEELMGSLEGNEGYGRADYFLVGKDFPSYIECQEKVDEAYRDQKKWTKMSILNTAGSYKFSSDRTIHEYARHIWMIDPIVIP* 934
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 649076 654363 - Vvi1g61 Vvi1g61 769261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g61 933 PANTHER ALPHA-1,4 GLUCAN PHOSPHORYLASE L-2 ISOZYME, CHLOROPLASTIC/AMYLOPLASTIC 22 505 - -
Vvi1g61 933 PANTHER ALPHA-1,4 GLUCAN PHOSPHORYLASE L-2 ISOZYME, CHLOROPLASTIC/AMYLOPLASTIC 523 933 - -
Vvi1g61 933 TIGRFAM P_ylase: glycogen/starch/alpha-glucan phosphorylases 514 927 IPR011833 GO:0004645|GO:0005975|GO:0030170
Vvi1g61 933 Pfam Carbohydrate phosphorylase 171 926 IPR000811 GO:0005975|GO:0008184
Vvi1g61 933 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 79 930 - -
Vvi1g61 933 PIRSF Glucan_phosphorylase_GlgP 101 933 IPR000811 GO:0005975|GO:0008184
Vvi1g61 933 ProSitePatterns Phosphorylase pyridoxal-phosphate attachment site. 771 783 IPR035090 -
Vvi1g61 933 PANTHER GLYCOGEN PHOSPHORYLASE 22 505 IPR000811 GO:0005975|GO:0008184
Vvi1g61 933 PANTHER GLYCOGEN PHOSPHORYLASE 523 933 IPR000811 GO:0005975|GO:0008184
Vvi1g61 933 Gene3D Glycogen Phosphorylase B; 75 582 - -
Vvi1g61 933 CDD GT35_Glycogen_Phosphorylase 89 925 - -
Vvi1g61 933 Gene3D Glycogen Phosphorylase B; 583 912 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g61 K00688 - vvi:100257811 1849.71