Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g611 ATGGGAGGGAAAAGTTCGAAACGGCGGAGTGGGAGAGAATATCCATCGTTTGAATCGTCTTCATTCAACCACCATGGTTACTCACAGTCACAGCCTTATGAGGAGGCCTATCCAGCCCAGCCATACCACACGCCGCAGCACCACAGCCCTCCTCCACCTCGCTACTACAGCGGTGCTCAAACTCCTCACCGGCACCCCCAATTGGACCGGCGTTACTCCAGGATAGCTGATAATTATAATAGCTTGGATCAGGTTACTGCTGCTCTTGCTCAAGCTGGCCTTGAGTCTTCTAACCTCATTGTTGGTATTGACTTCACCAAGAGTAATGAGTGGACAGGTTCCAGGTCATTCAATAGGAAGAGCTTACATCACATTGGAAGGGGTCAAAATCCATATGAGCAAGCAATAAGTATTATTGGGAAGACCTTATCTGCATTTGATGAGGATAACTTGATTCCCTGCTTTGGATTTGGAGATGCCTCAACACACGATCAAGACATCTTCAGTTTCTACCAGGACGAGAGGCCCTGCAATGGATTTGAAGAAGTACTGATGAGATACAGAGAATTGGTTCCCAGCCTTCGACTTGCAGGACCCACCTCTTTTGCACCCATCATTGAAATGGCCTCGACCATTGTTGAGAAAAGTGGTGGCCAATACCATGTTTTGCTGATAATCGCTGATGGACAGGTGACACGAAGCGTTGATACACAGCATGGCCAGCTCAGCTCTCAAGAGCAAAAGACGATCGACGCAATTGTAAAAGCAAGTAAGTACCCCTTGTCAATAATTTTGGTTGGGGTTGGAGATGGGCCTTGGGATGTGATGAGGGAGTTCGATGACAACATCCCTGCTCGTGCCTTCGATAATTTCCAGTTCGTGAATTTTACAGAAATTATGTCAAAGAATGTTGATTCATCGAGAACACAGACAGAGTTTGCTCTTGCAGCCTTGATGGAAATTCCTTCCCAATATAAAGCAACTATTGATCTCAATACACTGGGTGTAAGGAGAGGGAATGCTCCTACTAGGGTTGCTCTCCCCCCACCCCAGTATGGAACACCTTCTTTCAGCAGCAGCTCAAAACCTTACCACTCGAACAGTTTCCAAAAAAGCGCTGAGTCTTATCCTGAATATGAGGCAGCAGTCAGCACAGGCCCATCTTCTAATTCTCTTTATGATAACAAGGTTTGCCCCATTTGTCTCAGTAATCCAAAGGATATGGCTTTTGGTTGTGGTCATCAGACTTGCTGTGAGTGTGGAGTAGACCTCAATTCATGCCCCATTTGCCGAAGCCCGATCCAGACTAGAATAAAGCTGTATCAATAA 1329 46.35 MGGKSSKRRSGREYPSFESSSFNHHGYSQSQPYEEAYPAQPYHTPQHHSPPPPRYYSGAQTPHRHPQLDRRYSRIADNYNSLDQVTAALAQAGLESSNLIVGIDFTKSNEWTGSRSFNRKSLHHIGRGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDIFSFYQDERPCNGFEEVLMRYRELVPSLRLAGPTSFAPIIEMASTIVEKSGGQYHVLLIIADGQVTRSVDTQHGQLSSQEQKTIDAIVKASKYPLSIILVGVGDGPWDVMREFDDNIPARAFDNFQFVNFTEIMSKNVDSSRTQTEFALAALMEIPSQYKATIDLNTLGVRRGNAPTRVALPPPQYGTPSFSSSSKPYHSNSFQKSAESYPEYEAAVSTGPSSNSLYDNKVCPICLSNPKDMAFGCGHQTCCECGVDLNSCPICRSPIQTRIKLYQ* 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6977774 6982566 - Vvi1g611 Vvi1g611 769811

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g611 442 SUPERFAMILY vWA-like 97 280 IPR036465 -
Vvi1g611 442 MobiDBLite consensus disorder prediction 15 35 - -
Vvi1g611 442 CDD RING-HC_RGLG_plant 397 441 IPR045317 GO:0061630|GO:0070534
Vvi1g611 442 PANTHER RING-FINGER PROTEIN 1 441 - -
Vvi1g611 442 SUPERFAMILY RING/U-box 391 437 - -
Vvi1g611 442 MobiDBLite consensus disorder prediction 352 366 - -
Vvi1g611 442 Pfam Copine 121 335 IPR010734 -
Vvi1g611 442 ProSiteProfiles Zinc finger RING-type profile. 398 431 IPR001841 -
Vvi1g611 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 442 IPR013083 -
Vvi1g611 442 Pfam Zinc finger, C3HC4 type (RING finger) 395 436 - -
Vvi1g611 442 SMART VWA_4 96 299 IPR002035 -
Vvi1g611 442 MobiDBLite consensus disorder prediction 1 66 - -
Vvi1g611 442 PANTHER COPINE FAMILY PROTEIN 1 1 441 - -
Vvi1g611 442 MobiDBLite consensus disorder prediction 343 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g611 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - vvi:100267987 904.82
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g611 Vvi14g1279 ECH
Vvi1g611 Vvi17g862 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g611 Blo01g00803 . Bda01g01762 . . . Bma14g01830 . . Cmo18g00725 . Cma18g00733 . . . Cpe09g00556 . Bhi07g01827 . . . . . . Cla05g02613 Cam05g2801 Cec05g2837 Cco05g2869 Clacu05g2804 Cmu05g2652 Cre05g2769 Cone13ag1094 . . . Lsi04g00627 Csa05g02262 Chy10g00832 Cme10g00600 . . Bda07g01646 . . Bpe02g01936 Bma01g00518 . . Cmo04g02800 . . . . . . . . . . . . . . . . . . . . . . . Chy09g00375 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136