Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g613 ATGGCTTCAGGAAAACGGTGGATGCACGGTCCGTCTGCGTGTCCCGTACTCCACACTCTAAACATCCCAATCAATCAATCCTCAGCCGGGCTGTCCACTTCTCTTCACAGCCCCGGCAACCTCATCACCGCCGTCCATTTAGATTACCAACCAACAATCCACCACGTCGCAGACGATCGTAACATCAATTTTTGTGATTTATTTTTTATATTTTTAAAAACTCAAGAACGACGGGAGAAACAGAGAGACTGGTTGGTAGCTATCGCTCCTCTCCTCTGTTGTCTTTCTCAAGGTACGATCTTGTTCGCCGTTTTCTCTCGCAAGAAGCAGCAATTATTTTTATCAAATTTCATCGCCGGTGAGGAAGACGCCGATGCCGTGTTGAGCGATGTGGAAGGTGACGATCCGGTGCCTGTGCCGATCGTCATCAAGAATCCGTCTCAGGAGGATGTATCCGTGGAGAGATTTCGAGAGCTTCTTGCCGAGGTGGATCGAGAGCGGCAAGCTCGGGAGGCAGCGGAGAATTCGAAATCGGAATTGCTAGTGGCCTTTAATCGGTTAAAGAGTCTTGCTCATGAGGCAATTAAGAAGCGAGATGAGAGCACGAGGCAACGGGATGAGGCATTGCGTGAAAAGGAAGAAGTTTTGAGATCAAATGATAAAGTTCTGAAGCAGAGGGATGAGATTGCTAAGCAATTGGATGAGGCGGTGAAGGCAAGGGAAGCCTCGCGATCTGAGATTGAAACTTCAGCACAAATGCTTGTGACTGGAATTGAGAAGATTTCAGGAAAGGTGAGTAATTTCAAGAATTTCACAGCAGGGGGATTGCCAAGGTCTCAGAAGTACACTGGATTGCCTGCCATTGCTTATGGAGTTATTAAGAGGACAAATGAAATAGTTGAAGAACTTGTTAGACAGATGGATGCAACAACTAAGTCCAGGAATGATGCTCGTGAACAGATGGAGCATAGAAATTATGAGATTGCTATTGAAGTGTCTCAGCTTGAAGCAACCATTAGTGGGCTGAGAGAAGAAATTCAACTGGCAGAAAATGAAATGTCTGAACTTAAACAAATAGTCAGTGAGTATGATCTTAAGTTGGGGAATTTGGAATCAATAATGGAGTCACAGAGGCATCTATTGTTTGACCAGTTAAATTTGGTATCCAAAATTCATGACCGAATTTATGATGTCATCAGGATTGTTGATGACAATAAATTGGATCAGTCAGAGGTCTCTGAGTCTTTGTTTCTTCCACAAGCAACGGACATGGAGGAGAACATCCGTGCTTCTTTAGCAGGCATGGAATCTATTTATGAGTTAACCAGAATTGTTGGAGAAAAAATAAGGAATTTAATGGAGGATCAGAGTCGTGAAGCAAAGAGTTTAAATGAAACGGTGACCCGATTAGTTAAGGAGAAAGAACAAATCGGATCTTTCCTGAGAAGTGCTTTGTCAAGAAGGATGGCATTAGATCCATCATCCAAAATGAAAGAGTTGTTTCAAGTTGCAGAAAATGGTTTAAGAGAGGCTGGGATAGAATTCAAATTTAGCAATCTTCTTGAGGATGGGAAGGTTATGGCGTCTCATGATAAAGCTGGTGTTTTGGAAACAGAGGAGGATGAACTATACAATATGACTGGTGCTTTGGAGCATATTGTTAAGGCATCTCAGCTTGAGATCATTGAACTGCAGCATTCAGTAGATGAATTAAGGGCAGAGTCAAGTTTACTTAAAGAGCATATGGAGGCTCAAGCTAAGGAGCTCAACCATAGGCAGCGTCGCATAGAGGAACTTGAAGAGAAGGAAAGAGTGGCAAATGAAAGTGTTGAAGGGCTTATGATGGATATTGCTGCTGCTGAAGAAGAAATTACAAGATGGAAAGTGGCAGCAGAACAAGAAGCTGCAGCAGGCAGAGCTGTCGAACAAGAATTTGTGTCTCAGTTATCAGCGATTCGTCAGGAACTCAAAGAGGCAAAGCAAGCTGTGATGGAGTCGGAGAAAAAGCTCAAATTCAAAGAAGAGACAGCAGCTGCTGCCATGGAAGCTAGAGATGCTGCTGAGAAATCATTGAGATTGGCAGACTTGCGGGCATCTAGGTTAAGGGATAGGGTGGAGGAGCTGACTCATCAGCTTGAGGAGTCTGATACCAGGGAAGACTCAAGGAGGAGTCGAAATGGGCCAAGATATGTATGCTGGCCTTGGGAATGGCTCGGGCTGAACTTTGTAGGTTTACACCAGCCTGACACAAACCAACAGAATTCAAATGAAATGGAGCTTTCCGAACCTCTTCTCTGA 2298 44.08 MASGKRWMHGPSACPVLHTLNIPINQSSAGLSTSLHSPGNLITAVHLDYQPTIHHVADDRNINFCDLFFIFLKTQERREKQRDWLVAIAPLLCCLSQGTILFAVFSRKKQQLFLSNFIAGEEDADAVLSDVEGDDPVPVPIVIKNPSQEDVSVERFRELLAEVDRERQAREAAENSKSELLVAFNRLKSLAHEAIKKRDESTRQRDEALREKEEVLRSNDKVLKQRDEIAKQLDEAVKAREASRSEIETSAQMLVTGIEKISGKVSNFKNFTAGGLPRSQKYTGLPAIAYGVIKRTNEIVEELVRQMDATTKSRNDAREQMEHRNYEIAIEVSQLEATISGLREEIQLAENEMSELKQIVSEYDLKLGNLESIMESQRHLLFDQLNLVSKIHDRIYDVIRIVDDNKLDQSEVSESLFLPQATDMEENIRASLAGMESIYELTRIVGEKIRNLMEDQSREAKSLNETVTRLVKEKEQIGSFLRSALSRRMALDPSSKMKELFQVAENGLREAGIEFKFSNLLEDGKVMASHDKAGVLETEEDELYNMTGALEHIVKASQLEIIELQHSVDELRAESSLLKEHMEAQAKELNHRQRRIEELEEKERVANESVEGLMMDIAAAEEEITRWKVAAEQEAAAGRAVEQEFVSQLSAIRQELKEAKQAVMESEKKLKFKEETAAAAMEARDAAEKSLRLADLRASRLRDRVEELTHQLEESDTREDSRRSRNGPRYVCWPWEWLGLNFVGLHQPDTNQQNSNEMELSEPLL* 766
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 6988613 6993527 + Vvi1g613 Vvi1g613 769813

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g613 765 Coils Coil 453 473 - -
Vvi1g613 765 Coils Coil 156 176 - -
Vvi1g613 765 Coils Coil 554 616 - -
Vvi1g613 765 Coils Coil 642 676 - -
Vvi1g613 765 PANTHER PARAMYOSIN 120 765 - -
Vvi1g613 765 Coils Coil 691 718 - -
Vvi1g613 765 Coils Coil 332 366 - -
Vvi1g613 765 Coils Coil 191 225 - -
Vvi1g613 765 Coils Coil 300 320 - -
Vvi1g613 765 PANTHER OS08G0559800 PROTEIN 120 765 IPR040300 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g613 - - - vvi:100266362 1174.84
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g613 . . . . . . . Bma15g00227 . Cmo18g00727 . Cma18g00735 . Car18g00683 . Cpe09g00554 . . . . . . . . . . . . . . . Cone13ag1093 Cone19ag1081 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009045 1 0 1 1 1 1 2 1 1 1 1 1 2 0 1 2 1 3 2 1 1 1 1 1 1 1 1 1 1 1 34