Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g617 ATGCTCCTTCAGCTCGGTGTCCCTACCGTCGTAGTCTCCTCTGCGGAAGCTGCAAGGGAATTCTTGAAAACTCATGATATTGATTGTTGCAGTCGACCTCCCTTAGGAGGTACGCAAGATCTGCTTGAGAGGAGTTTCCATGAAATGGACGGCTTCTACCAACAGGTGATCGAAGACCATCTCAACCCAGGAAGGGTGAAAGAGGAGCATGAAGACATCATCGACGTGCTGCTGAGAATAGAGAGGGAACAATCTGAATCCAGTGCCCTACAGTTTACTAAAGATAACGCGAAAGCAATCGTTATGGATTTATTCTTGGCTGGAGTGGACACTGGTGCAATCACCGTATCTTGGGCAATGACCGAGCTTGCTAGGAACCCAAGAATAATGAAAAAAGCCCAGGCTGAAGTTAGAAACTCCATTGGAAATAAAGGAAAAGTCACGGAGGGTGATGTCGATCAGCTTCACTACCTCAAGATGGTGGTCAAAGAAACTTTGAGACTGCATCCTCCCGCCCCACTTCTACTTCCAAGAGAAACCATCAAACACCATCTCATTTCTGTTTATAATTTAGAGATGAAGGCCAACATCTACCTGCCTACCTTGCAATTGATGCTCACAAGTGCTCGCTTACTACTTTTTGCCAGTGTAGTGAATAAATTATGTCCACATAAATTAGCTATAGTAGGGGCCAAGAAAAGTGCATCCTATGAGCCTTATGGTAGCAGCCAAGAGAAAACTGCAACCCTGTATAGCCTATTAATAATTTTTAACTTCTTCTACTGGCAGTTTTATATAAGTGGCTACAGCCATAGGATTTGTCTGCACCCTCTATGGTCTATGACTAAGCTTTGCTCTATTTTATCCCTATCTAAATTTTATATGGGGCAAAAGAAGCCGCTGCCGCCTGGCCCTACTAAGCTTCCCATTATAGGTAATTTGCACCAACTTGGTACGTTGCCTCACTACTCTTGGTGGCAACTATCTAAGAAATATGGCCCCATCATACTCCTTCAGCTCGGTGTCCCTACCGTCGTAGTCTCCTCTGCGGAAGCTGCAAGGGAATTCTTGAAAACTCATGATATTGATTGTTGCAGTCGACCTCCCTTAGTTGGACTTGGAAAATTCTCATACAATCACCAAGACATAGGTTTTGCGCCATACGGCGATTACTGGAGGGAGGTACGCAAGATCTGTGTTCATGAGGTGTTTAGCACAAAAAGGCTGCAGTCGTTTCAGTTCATCAGAGAAGAGGAGGTCGCTTTGCTGATTGATTCAATTGCGGAATCATCTTCTTCTGGAAGTCCTATTGATCTTACCGAGAGGTTAATGTCTCTCACTGCAAATATAATTTGCAGGATTGCATTCGGAAAGAGTTTTCAAGTGAGTGAGTTTGGTGACGGAAGATTTCAAGAAGTGGTTCGTGAAGCCATGGCTTTGTTGGGCGGGTTCACTGCAGCCGATTTCTTTCCGTACGTGGGTCGGATTGTGGATAGACTCACTGGTCTTCATGGAAGGCTTGAGAGGAGTTTCCTTGAAATGGACGGTTTCTACCAACGGGTGATTGAGGACCATCTCAACCCAGGAAGGGTGAAAGAGGAGCATGAAGACATTATCGACGTGCTGCTGAAAATACAGAGGGAACGGTCTGAATCCGGTGCTGTACAGTTTACTAAAGATAGTGCAAAAGCAATCCTCATGGATTTATTCTTGGCTGGAGTGGACACTGGTGCAATCACCCTAACTTGGGCAATGACCGAGCTTGCTAGGAACCCAAGAATAATGAAAAAAGCCCAGGTTGAAGTTAGAAACTCCATTGGAAATAAAGGAAAAGTCACGGAGGGTGATGTCGATCAGCTTCACTACCTCAAGATGGTGGTCAAAGAAACTTTGAGACTACATCCTCCCGTCCCACTTCTACTTCCAAGAGAAACCATAACCCAGAGGAGTTTCTGCCCGAGAGTGGAGCTCGCACTTGCCAATCTTTTATATCGTTTCAATTGGAACTTGCCGAATGGGATGAGGGAGGCAGATATTAACATGGAAGAAGCAGCAGGTCTTACTGTCCGTAAGAAGTTCGCTCTGAACCTTGTGCCAATTCTCCATCACTGTTTCGAGTTTTACCTTAGGGTGAAGTTGAGGTGCATCCCAAGCAAACCTAGGCCTCTTCCGAGGACGCCGATCCATGTGAGTATGAGGAAACTCAGTCACACTTTCCATCTCCATTGGTCGCAATCGGATCGAACCCTAACCCTAACCCTAGTTCTTTCAAAGAGATCGGACACGTTGACGACCATGGTTAGATGCAGGCAAACCGTGGTTGAGTCAACTTTTTTTATATTTTCAAAATGGAATATACGGCACCTAGGGTTAGATGTTCCAAGGGGCAACTCTGTGACCCTGTCATCTATAGGTTTACACAGCGCATCGATGTTGTGCCACGTATCTAATGGGCTCTTTCATCCTCATGAAACAACTTCATTTGCATTTTTTGCCTTAATTTCTTTATCATCTGGTCATATAAAATTGAACAATGCTCTAGCCACTAGAATTGACATCTCAACTCCGGATTTATAA 2577 44.82 MLLQLGVPTVVVSSAEAAREFLKTHDIDCCSRPPLGGTQDLLERSFHEMDGFYQQVIEDHLNPGRVKEEHEDIIDVLLRIEREQSESSALQFTKDNAKAIVMDLFLAGVDTGAITVSWAMTELARNPRIMKKAQAEVRNSIGNKGKVTEGDVDQLHYLKMVVKETLRLHPPAPLLLPRETIKHHLISVYNLEMKANIYLPTLQLMLTSARLLLFASVVNKLCPHKLAIVGAKKSASYEPYGSSQEKTATLYSLLIIFNFFYWQFYISGYSHRICLHPLWSMTKLCSILSLSKFYMGQKKPLPPGPTKLPIIGNLHQLGTLPHYSWWQLSKKYGPIILLQLGVPTVVVSSAEAAREFLKTHDIDCCSRPPLVGLGKFSYNHQDIGFAPYGDYWREVRKICVHEVFSTKRLQSFQFIREEEVALLIDSIAESSSSGSPIDLTERLMSLTANIICRIAFGKSFQVSEFGDGRFQEVVREAMALLGGFTAADFFPYVGRIVDRLTGLHGRLERSFLEMDGFYQRVIEDHLNPGRVKEEHEDIIDVLLKIQRERSESGAVQFTKDSAKAILMDLFLAGVDTGAITLTWAMTELARNPRIMKKAQVEVRNSIGNKGKVTEGDVDQLHYLKMVVKETLRLHPPVPLLLPRETITQRSFCPRVELALANLLYRFNWNLPNGMREADINMEEAAGLTVRKKFALNLVPILHHCFEFYLRVKLRCIPSKPRPLPRTPIHVSMRKLSHTFHLHWSQSDRTLTLTLVLSKRSDTLTTMVRCRQTVVESTFFIFSKWNIRHLGLDVPRGNSVTLSSIGLHSASMLCHVSNGLFHPHETTSFAFFALISLSSGHIKLNNALATRIDISTPDL* 859
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7031054 7050240 - Vvi1g617 Vvi1g617 769817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g617 858 PANTHER CYTOCHROME P450 71B11-RELATED 35 199 - -
Vvi1g617 858 PANTHER CYTOCHROME P450 71B16-RELATED 292 648 - -
Vvi1g617 858 Pfam Cytochrome P450 39 203 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g617 858 Pfam Cytochrome P450 302 647 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g617 858 Gene3D Cytochrome P450 4 207 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g617 858 PRINTS P450 superfamily signature 625 636 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g617 858 PRINTS P450 superfamily signature 572 589 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g617 858 PANTHER CYTOCHROME P450 71B16-RELATED 655 702 - -
Vvi1g617 858 PANTHER CYTOCHROME P450 71B16-RELATED 1 40 - -
Vvi1g617 858 PANTHER CYTOCHROME P450 71B16-RELATED 35 199 - -
Vvi1g617 858 Gene3D Cytochrome P450 295 652 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g617 858 SUPERFAMILY Cytochrome P450 43 201 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g617 858 PANTHER CYTOCHROME P450 71B11-RELATED 655 702 - -
Vvi1g617 858 PANTHER CYTOCHROME P450 71B11-RELATED 1 40 - -
Vvi1g617 858 PANTHER CYTOCHROME P450 71B11-RELATED 292 648 - -
Vvi1g617 858 SUPERFAMILY Cytochrome P450 302 698 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g617 858 PRINTS E-class P450 group I signature 352 373 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g617 858 PRINTS E-class P450 group I signature 624 642 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g617 858 PRINTS E-class P450 group I signature 581 607 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g617 858 PRINTS E-class P450 group I signature 446 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g617 858 PRINTS E-class P450 group I signature 329 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vvi1g617 858 PRINTS E-class P450 group I signature 561 578 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g617 - - - vvi:100250924 684.871
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g617 Vvi17g856 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g617 . . . . . . . . . Cmo18g00751 . Cma18g00748 . . . . . Bhi07g01811 . . . . . . Cla05g02607 . . . . . . . . . . Lsi04g00620 Csa05g02273 Chy10g00837 Cme10g00595 . . . . . . . . . . . Cma04g01781 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000114 2 12 3 1 0 7 0 7 6 6 11 9 15 7 3 22 9 4 0 10 11 2 0 8 13 10 6 17 8 7 216