Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g620 ATGTATAGAAGTCTTGGCCGACATCGGCTTGCATATCGTGCACAAATATCCAGCTATGTTAAAGCAGGTTTGATCGATCAAGCTCTCAAAACTTTTGATGAGATGACTAAATCCAATTGCCGTGTGTTTAGTATTGACTACAATAGATTTATTGGAGTGTTGGTTCGTCAATCTCGATTTGATTTGGCAGAGCAGTATTACGATAGAATGATACCACAAGGCTTTTCTTTGAATTCATTTACATATTCAAGGTTCATTTCTGGTTTGTGTAAGGTGAAGAATTTTGTCCTTATTGAGAAACTTCTAGAGGACATGGATAGGCTTGGATATGTGCCTGATATCTGGGCTTATAATATATATCTGAATCTTTTGTGCTGTGAGAACCAGCTAGATGTGGCTCTAGGGGTAGTGCAGACCATGGTTGAAAAGGGAAGAGAGCCTGATATTGTAACCTATACCATAGTCATCAATGGGCTGTGTAGAGCAGGAAGGTTTGATTCTGCTGTTGAAATTTGGCGTAATATGGTTAGAAAGGGGTTTAGTCCTGATGAAAAAGCTTGCAGGGCACTTGTCCTTGGTTTGTGTCATGATGGGAAGGTTGATTTAGCTTATGAGCTCACGGTGGGTGCAATGAGGGGACGAATTAAGTTTAGTAAGTCAATTTACAATTCTCTTATCAATGGGTTTTGTCAGGCTGGTTGGATTGACAAAGCACAATCGATTATATCCTTCATGAGAAGGAATGGATGTGAGCCAGATTTGGTTACATACAATGTGCTGCTAAACTACTGTTGTGATGAGCTCCTGCTGGAGGAGGCCGAGAATTTGATGAAGAAGATGGAAAGGAGCGGGGTGGAACCCGATGTATATAGTTACAATGAACTTCTTAAGGGCCTTTGTAAAGCTAACCGGTTAGACAAGGCTTATATGATGATGGTGAACAAGATGGAGGCCAAAGGATTGTGTGATGTTGTATCCTACAATACCATCATTAAAGCGCTTTGCACGGCGTCCCATACTAAAAGGGCATACAAGTTATTTGAGGAGATGGGTGGAAAGGGGATTACTCCTGATGTGGTGACCTTTACCATACTTATAAAAGCTTTTCTTAGAGAAGGTAGTTCAAACATAGCCAAGAAGCTTCTTGATCAGATGACAGGATTGGGTTTGTTACCAGATCGTGTACTGTACACTACAATTGTTGATCACCTGTGTAAGACTGGGAAAATGGGGATGGCTCACAGTGTTTTTTGTGACATGGTAGAGAGTGGGATAACTCCTGATGTAGTTTCATACAATGCCCTCATAAATGGGCTTTGCAGGGCTTCCAGAGTAAGTGAAGCCATGCATCTATATGAGGATATGCATACTGGAGGACCTTGTCCTGATGAGGTGACTTTTAAATTGATCATAGGGGGGCTCATATGGGAAAAGAAGCTCTCAGTGGCCTGTAGGGTGTGGGATCAGATGATGGAGAAGGGCTTTACTCTTGATGGAGCTGTTTCTGAGACTCTAGTTAATGCCATCCATTCAAATGATGCATCCTGCATGAATATCTGA 1560 41.67 MYRSLGRHRLAYRAQISSYVKAGLIDQALKTFDEMTKSNCRVFSIDYNRFIGVLVRQSRFDLAEQYYDRMIPQGFSLNSFTYSRFISGLCKVKNFVLIEKLLEDMDRLGYVPDIWAYNIYLNLLCCENQLDVALGVVQTMVEKGREPDIVTYTIVINGLCRAGRFDSAVEIWRNMVRKGFSPDEKACRALVLGLCHDGKVDLAYELTVGAMRGRIKFSKSIYNSLINGFCQAGWIDKAQSIISFMRRNGCEPDLVTYNVLLNYCCDELLLEEAENLMKKMERSGVEPDVYSYNELLKGLCKANRLDKAYMMMVNKMEAKGLCDVVSYNTIIKALCTASHTKRAYKLFEEMGGKGITPDVVTFTILIKAFLREGSSNIAKKLLDQMTGLGLLPDRVLYTTIVDHLCKTGKMGMAHSVFCDMVESGITPDVVSYNALINGLCRASRVSEAMHLYEDMHTGGPCPDEVTFKLIIGGLIWEKKLSVACRVWDQMMEKGFTLDGAVSETLVNAIHSNDASCMNI* 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7085349 7086909 - Vvi1g620 Vvi1g620 769820

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g620 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 358 392 IPR002885 -
Vvi1g620 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Vvi1g620 519 Gene3D Tetratricopeptide repeat domain 411 516 IPR011990 GO:0005515
Vvi1g620 519 Gene3D Tetratricopeptide repeat domain 7 95 IPR011990 GO:0005515
Vvi1g620 519 Gene3D Tetratricopeptide repeat domain 313 410 IPR011990 GO:0005515
Vvi1g620 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 463 497 IPR002885 -
Vvi1g620 519 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 2 516 - -
Vvi1g620 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Vvi1g620 519 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 2 516 - -
Vvi1g620 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Vvi1g620 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
Vvi1g620 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 147 IPR002885 -
Vvi1g620 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 323 357 IPR002885 -
Vvi1g620 519 Pfam PPR repeat family 252 301 IPR002885 -
Vvi1g620 519 Pfam PPR repeat family 323 370 IPR002885 -
Vvi1g620 519 Pfam PPR repeat family 392 441 IPR002885 -
Vvi1g620 519 Pfam PPR repeat family 112 161 IPR002885 -
Vvi1g620 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 288 319 IPR002885 -
Vvi1g620 519 Gene3D Tetratricopeptide repeat domain 213 312 IPR011990 GO:0005515
Vvi1g620 519 Gene3D Tetratricopeptide repeat domain 96 212 IPR011990 GO:0005515
Vvi1g620 519 Pfam PPR repeat 80 109 IPR002885 -
Vvi1g620 519 Pfam PPR repeat 16 40 IPR002885 -
Vvi1g620 519 Pfam PPR repeat 221 250 IPR002885 -
Vvi1g620 519 Pfam PPR repeat 465 495 IPR002885 -
Vvi1g620 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 8 42 IPR002885 -
Vvi1g620 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 428 462 IPR002885 -
Vvi1g620 519 TIGRFAM PPR: pentatricopeptide repeat domain 150 184 IPR002885 -
Vvi1g620 519 TIGRFAM PPR: pentatricopeptide repeat domain 221 253 IPR002885 -
Vvi1g620 519 TIGRFAM PPR: pentatricopeptide repeat domain 80 114 IPR002885 -
Vvi1g620 519 TIGRFAM PPR: pentatricopeptide repeat domain 325 359 IPR002885 -
Vvi1g620 519 TIGRFAM PPR: pentatricopeptide repeat domain 395 429 IPR002885 -
Vvi1g620 519 TIGRFAM PPR: pentatricopeptide repeat domain 430 464 IPR002885 -
Vvi1g620 519 TIGRFAM PPR: pentatricopeptide repeat domain 47 78 IPR002885 -
Vvi1g620 519 TIGRFAM PPR: pentatricopeptide repeat domain 360 393 IPR002885 -
Vvi1g620 519 TIGRFAM PPR: pentatricopeptide repeat domain 290 321 IPR002885 -
Vvi1g620 519 TIGRFAM PPR: pentatricopeptide repeat domain 116 149 IPR002885 -
Vvi1g620 519 TIGRFAM PPR: pentatricopeptide repeat domain 16 41 IPR002885 -
Vvi1g620 519 TIGRFAM PPR: pentatricopeptide repeat domain 255 289 IPR002885 -
Vvi1g620 519 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 393 427 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g620 - - - vvi:100261187 1051.58
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g620 . . . . . . Bma14g01828 . . Cmo18g00756 . Cma18g00751 . Car18g00685 . Cpe09g00548 . Bhi07g01807 . . . . . . Cla05g02598 Cam05g2789 Cec05g2827 Cco05g2859 Clacu05g2791 Cmu05g2639 Cre05g2755 Cone13ag1092 . . . Lsi04g00608 Csa05g02277 Chy10g00843 Cme10g00587 . . Bda07g01644 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006460 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 1 1 1 1 1 1 1 0 1 1 1 30