Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g621 ATGTTACGTGAAGAAGATAAAGACCGCCTCTCCGGTGGAACGGGGACTCGGAGAGCTTATTTACGGTCAGTTTCTTGGACTGATCGCTCTCCAACGAAACCTCTCCCTAGACCACAGCCAAACAGTAAGGTGAGGTCGTGTCTGCCACCACTTCAGCCTCTTTCAATTTCCCGGCGCAACGCAGAGGAGTGGCCTAGGGCGGGGTCCGATGATCTGGGTGTGTGGCCGCATCCTCCAACCCCTGGGGGGAGATTGGGGTCCATTAAACCCCTTGAGAATTCAAATTCAGAACAACCCCAGAGAGAATTTCAGTTCAAGAGGGATAAGCTTGCCTTCTTTGATAAGGAATGCTCCAGAATTGCAGATCATATATATTTGGGAAGTGATGCTGTTGCTAAGAACCGTGAAACTCTAAGGCAGAATGGTATCACCCATGTCTTGAACTGTGTTGGGTTTGTTTGCCCCGAGTATTTCAAGAGTGATCTTGTTTACAAGACGCTTTGGTTGCAAGATAGCCCATCTGAGGACATCACGAGTATTCTTTATGATGTGTTTGATTACTTTGAGGATGTTAGAGAGCAAGGTGGGCGGGTTCTTGTTCATTGTTGTCAGGGAGTGTCAAGATCGAGCTCTCTGGTCATTGCATATCTCATGTGGAGGGAGGGCCAGAGCTTTGAAGGTGCATTTCAGTATGTGAAAGCAGCCCGAGGAGTGACTAACCCGAATATGGGTTTTGCTTGTCAACTCCTGCAGTGCCAGAAGAGGGTGCATGCTGTACCAGTGAGCCCAAATTCTGTGCTTAGGATGTATCGGATGGCTCCCCACTCTCCATATGATCCTCTTCATCTTGTACCAAAAATGTTAAGCCATCCAGGTACACTAGGACTTGACTCTCGTGGGGCATTTATTGTTCATGTCCCTTCAGCGATATATGTCTGGATTGGGAAGAATTGCAACATGGTGATGTCAAATAATGCAAGAGCAGCTGCCTATCAGATGGTAGCAACAAAGAAAGTTGATGAATACAATCTTGATTTTGAAATTTTCCATAAGGCTCTTGCTGGTGGGGTTGTTCCACCTTTTCCATTATCAGGAACTGGATCTGAGACTTGTCTCCCTGCTAGGGAAAATGGATGGGGTCGACTAAGGCGGAAGTTTACTAGTGGCTTTATGAAGGAATTTGTCACAAAACTGAATTGTGACACCATTCAATCCAGTCATGGAGCAGATATGATTATAGATACTTGTAATGAAGTGAAACAACCCGTTTCCATTTCTAATCCTTTGTCACCATCAACACCTCCATGCGGTTCACCAGATTCACTTCCTTGTTCCCCAAATGGCAGCTCAATTAGCAGTATTGGTAAAGACATGGAACACCCTGTTCCTCTTACTGATCCTTTGTTGTCAGAAACACCTAACTGTGGTTCACCAGATTCTTTCTCTCGTTTTCTGGGTGGTAGCCCTAAGTTCAGTTCCAAATCTCCTTCACTCTCACCTTCGACCTCTGAGTATTCCAGTTCATTTACCTTTTCGCCCTCATCTTCTAATTGGTCCGATTTGTCATACCTTTCTTCTCAACAACCTTCACCTTCCAGCCTCGAGCCCACAGATCCATTCTGTGTGAAGAATGGAACCTGCCCCTCCATTGCTGAGCGCAGAGGGAGTAATCCTCCACCTAGGATGTTACTACCCTCAGTTGATGAACCACCTCAAGTGCCTCCGAACCTGGTAAGGTCTTGGTCCTTTTCCTTACCTGATTTGGATGATGTTATGATGAAGGATGTCGATTGTGACCAGTTCGAGCATGAAGGCAATGGAGAAGAGCTAATGTTAGATGGTGAACATTTTGGTACTGGAAATGAGTTAGAAAGTGAGATTGAAGATAAGAAAGTGTATGGTAACTTTTATGTTCCTTTGGGTGATACATCTGATAGGGTTGCAGAAGAAACAAATCTAGCTCTTTACCAGTGGCCTACCATGAATAAAGTGGAGTTGTATAACTTTGGTGTCCTTGATTCTAGATCAGTATATATTATGTTTGCTCCGGATTCAAACTTGGGCACAAGTAATCCTGAGGTTTTATATGTATGGCTAGGAAGGGGTGTTTCATATGAAAAAGGCCAGAGTCAATTGACTAGCAGTGATGGCACATGCAAGGATAATCATGTCCACTGGGAGATGGTTGGGCACAAATTCCTTGCACAAATGGGTTTGCGGAGTGAAGCCCTCATTCAGATAGTCAGGGAAGGCGAGGAGCCGATGCAGCTCCTGAACCATCTAAACTCTTTCTCATTTCACAAGACAGAAAACAGCAGTCACAGACTTACAGCTGAGAAAAATTAG 2346 45.1 MLREEDKDRLSGGTGTRRAYLRSVSWTDRSPTKPLPRPQPNSKVRSCLPPLQPLSISRRNAEEWPRAGSDDLGVWPHPPTPGGRLGSIKPLENSNSEQPQREFQFKRDKLAFFDKECSRIADHIYLGSDAVAKNRETLRQNGITHVLNCVGFVCPEYFKSDLVYKTLWLQDSPSEDITSILYDVFDYFEDVREQGGRVLVHCCQGVSRSSSLVIAYLMWREGQSFEGAFQYVKAARGVTNPNMGFACQLLQCQKRVHAVPVSPNSVLRMYRMAPHSPYDPLHLVPKMLSHPGTLGLDSRGAFIVHVPSAIYVWIGKNCNMVMSNNARAAAYQMVATKKVDEYNLDFEIFHKALAGGVVPPFPLSGTGSETCLPARENGWGRLRRKFTSGFMKEFVTKLNCDTIQSSHGADMIIDTCNEVKQPVSISNPLSPSTPPCGSPDSLPCSPNGSSISSIGKDMEHPVPLTDPLLSETPNCGSPDSFSRFLGGSPKFSSKSPSLSPSTSEYSSSFTFSPSSSNWSDLSYLSSQQPSPSSLEPTDPFCVKNGTCPSIAERRGSNPPPRMLLPSVDEPPQVPPNLVRSWSFSLPDLDDVMMKDVDCDQFEHEGNGEELMLDGEHFGTGNELESEIEDKKVYGNFYVPLGDTSDRVAEETNLALYQWPTMNKVELYNFGVLDSRSVYIMFAPDSNLGTSNPEVLYVWLGRGVSYEKGQSQLTSSDGTCKDNHVHWEMVGHKFLAQMGLRSEALIQIVREGEEPMQLLNHLNSFSFHKTENSSHRLTAEKN* 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7094754 7100348 + Vvi1g621 Vvi1g621 769821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g621 781 MobiDBLite consensus disorder prediction 424 473 - -
Vvi1g621 781 CDD DSP 117 251 - -
Vvi1g621 781 MobiDBLite consensus disorder prediction 520 540 - -
Vvi1g621 781 Pfam Dual specificity phosphatase, catalytic domain 124 254 IPR000340 GO:0008138|GO:0016311
Vvi1g621 781 Gene3D Protein tyrosine phosphatase superfamily 89 258 IPR029021 -
Vvi1g621 781 ProSitePatterns Tyrosine specific protein phosphatases active site. 200 210 IPR016130 GO:0016311|GO:0016791
Vvi1g621 781 Gene3D Severin 268 356 IPR029006 -
Vvi1g621 781 SMART dsp_5 116 255 IPR020422 GO:0006470|GO:0008138
Vvi1g621 781 PANTHER MKPA PROTEIN 10 762 - -
Vvi1g621 781 SUPERFAMILY Actin depolymerizing proteins 651 774 - -
Vvi1g621 781 MobiDBLite consensus disorder prediction 1 100 - -
Vvi1g621 781 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 175 236 IPR000387 GO:0016311|GO:0016791
Vvi1g621 781 SUPERFAMILY Actin depolymerizing proteins 262 335 - -
Vvi1g621 781 MobiDBLite consensus disorder prediction 520 539 - -
Vvi1g621 781 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 108 257 IPR029021 -
Vvi1g621 781 MobiDBLite consensus disorder prediction 18 32 - -
Vvi1g621 781 ProSiteProfiles Dual specificity protein phosphatase domain profile. 116 258 IPR020422 GO:0006470|GO:0008138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g621 - - vvi:100254928 1037.71