Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g622 ATGGCAATGGAAACTGTAAGGGTTCGTGTGGTGTTGGAAGATCCCGATCTTCTGAACAAGACACAGAATTCAGAGGGACTGAGGCGGAGTTGGCTTCTCCTCAAACCCCAACACAAAACCATCTCCGACCTCTCTTCCTATCTCCTTCGCATCTTCAATCTCCATGATTTTTGCCCTAATGGCCTCCTCCTCTCTATGGATGGCTTTGTTTTGCCCTCTTTTGAGTCCACTTGTATTTTAAAGGACAAGGAGATCATTAGTGTGAAAAGGAAAGGTGGGGCAGTGATTGATCTTCTTGAGGTTGGTGATGAGACAAATTGCTCTGAGGATGAAGCAATCGTGGAGAATCAGCACATACATAGGGGAGTGAAGCTTTTGGCGAATGAGGAGTTTGACAAGGAGACTGGAGGGTATGAAAGTGAATCTGAAGAGGATGAACCTGATCAACCAGAGGAAACAGTGCAAGTGGAGACTGCATCGGCCGGAAATGCAGGTTCCAAGAAAAGAAAAGCATCCAGGAAACTTAAGAGCCCAAAGAGGAAGAAAAACAAATATACAAGGCTTGAAAAATGCCCAGTGGTTCTGGAAGATGTTGAAAATGGTGTATGTGAGGAGCAGACCAAAAGCTGTGATGACTGCACTGCCCTCCCCAAGAAGGGTAGTCTCAAGAAGCACAAGTCATCCAATGTGAATGGTAAACCAGATAAAGCTAGGACCCTCAACATTGATGAAAGAAGTAATGATGTCGATGAATCTTCGCCCAATGCAAAGAGGTGTGGTGAGCTTCAAGAAAATGGCAGTCAGGGTGTGGAAGTTGCCAATCCACCTGATGGAACGCAAAAGTACCCTAGTAGAAGTGCTCGGCGTAAAAAGGCCAAGCGGAAATGGCTGCGGGAACTAGCTAAAGTTGAAAAGAAAGAGATGCATCAGAGACAATCACCTGAAAAAGAGGTTCAAAAGAATTCTCTAGAGCATCAGCAACCTGATCAAAATAGTGATACAGATGATGCTGTCATTGTTCCCATAGTAATTAGGCCAGGGCATATTCGCTTTGAGCCCCTTGGAAAAGACCAGACTATCCAGCAAAATCCAGTTTCGGTGGAAACCTTTCAGTGGAACGGAACTACCAGCAAGAAGAAGGGTCAAAAATGGGGTAAAGAGAAAATGTCTTGTAGAAGGAATGATTATAAGGATTTCAACCAACAACATTCTGAGACATTTGCTGTTGAAGAAGGGACCCCTCCAAAGGATCCCATGGACTTTGACAAGCTTCCTTCCCTCACTAGCTCACCTAAGGAAGGTGATATGATTGCATATCGTTTGATTGAGTTATCATCAACCTGGACCCCTGAGCTATCCACCTTCCGAGTTGGGAAAATATCATCATATGATCCTGAATCCAACAAACTTATACTGATATCTGTTCCTGAATCCCCTATTGTTGCTGAGACAAGGATCGATGAAGATGCATCTGCGCTAGAACCAGACCCAGATACATCCCTTTACAGGGAAGATGGATCTTTAGAGATAGATTTTTCATCACTCATTGACGTTCGAATTATCAAATCTGGCAACTCACATCTGGAAAAAGCAGTCACTGCTAGAGTTGAAGCTCCTGTGGACACTCAAGATGCTGTGTCTGGTGTGAAACCCAACAATAAAAACAGTGGAATGTCTACTTCTCTTCCAGGTGGGGAGCTCAATATCACTCAAGTTTCTGTAGCAGGAGTGGAACACAACATTAACAGAGAAATGACTGCCCCTCCCCCAGAAAATGGAAAAGTAAATGCATGGGATGAAATCGATAAGGTTTTGAGTGCAAAGAAGGCGCAGCTGTCCCAGGAAGATGGTTCTAGTAAGAAGGAGAGTCCAGGCAGGAGTCCATGGTCATATAAAGCATTGAGAGGCAGTGCACTGGGCCCAACAATGTCGTTCTTAAGAGCACAAAATAACTTTTGA 1959 44.31 MAMETVRVRVVLEDPDLLNKTQNSEGLRRSWLLLKPQHKTISDLSSYLLRIFNLHDFCPNGLLLSMDGFVLPSFESTCILKDKEIISVKRKGGAVIDLLEVGDETNCSEDEAIVENQHIHRGVKLLANEEFDKETGGYESESEEDEPDQPEETVQVETASAGNAGSKKRKASRKLKSPKRKKNKYTRLEKCPVVLEDVENGVCEEQTKSCDDCTALPKKGSLKKHKSSNVNGKPDKARTLNIDERSNDVDESSPNAKRCGELQENGSQGVEVANPPDGTQKYPSRSARRKKAKRKWLRELAKVEKKEMHQRQSPEKEVQKNSLEHQQPDQNSDTDDAVIVPIVIRPGHIRFEPLGKDQTIQQNPVSVETFQWNGTTSKKKGQKWGKEKMSCRRNDYKDFNQQHSETFAVEEGTPPKDPMDFDKLPSLTSSPKEGDMIAYRLIELSSTWTPELSTFRVGKISSYDPESNKLILISVPESPIVAETRIDEDASALEPDPDTSLYREDGSLEIDFSSLIDVRIIKSGNSHLEKAVTARVEAPVDTQDAVSGVKPNNKNSGMSTSLPGGELNITQVSVAGVEHNINREMTAPPPENGKVNAWDEIDKVLSAKKAQLSQEDGSSKKESPGRSPWSYKALRGSALGPTMSFLRAQNNF* 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7102260 7113695 - Vvi1g622 Vvi1g622 769822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g622 652 MobiDBLite consensus disorder prediction 228 257 - -
Vvi1g622 652 MobiDBLite consensus disorder prediction 134 183 - -
Vvi1g622 652 PANTHER COILIN P80 3 650 IPR024822 -
Vvi1g622 652 MobiDBLite consensus disorder prediction 297 323 - -
Vvi1g622 652 MobiDBLite consensus disorder prediction 136 152 - -
Vvi1g622 652 Pfam Coilin N-terminus 6 183 IPR031722 -
Vvi1g622 652 MobiDBLite consensus disorder prediction 258 274 - -
Vvi1g622 652 MobiDBLite consensus disorder prediction 217 336 - -
Vvi1g622 652 MobiDBLite consensus disorder prediction 543 565 - -
Vvi1g622 652 MobiDBLite consensus disorder prediction 546 565 - -
Vvi1g622 652 MobiDBLite consensus disorder prediction 167 183 - -
Vvi1g622 652 MobiDBLite consensus disorder prediction 606 634 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g622 K13150 COIL, CLN80; coilin - vvi:100256103 1239.94
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g622 . . . . . . . Bma15g00225 . Cmo18g00758 . Cma18g00754 . Car18g00687 Sed06g1696 Cpe09g00546 Cpe01g01574 Bhi07g01803 Tan04g0152 Cmetu10g1657 . Hepe10g0055 . . Cla05g02596 Cam05g2787 Cec05g2825 Cco05g2857 Clacu05g2789 Cmu05g2637 Cre05g2753 Cone13ag1090 Cone19ag1079 . Cone12ag0681 Lsi04g00605 Csa05g02279 Chy10g00845 Cme10g00585 Blo06g00843 . . . . . . . . . . Cma04g01777 Cma05g00049 Car04g01802 Car05g00038 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005023 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 3 1 2 1 1 1 1 1 1 2 1 1 41