Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g623 ATGGCGGAGCTCCGTCACTCGAGCTCGATCGGAACCCGAGCTACGCCATCCCCGTTGAAGCGCGATGAGGACTCGTCCCCTTTCTTGCCCGACAACCCAACGGACCACTACGATCGTCACTCCTCACGAGATCGGGATCGCGACCGTCCCTTCTGGTCCAATTTTCACTCCATATGTCCATACTTCTCTGATGAGCCTAGGGTTTCTCCACATAACTACAAGATCTCGCTTTTCTGGATCCTTCTCGTCATTCTCGTCGGATTCATCTCAATTTCTGCTATTTTGAATGGTTTGAATTCTCCATACTTGTGTAGAAAAGATGGCATTGTTCTTCGCTGTCCGCGTGTCAAGGAACCTCCTTCACTCTGGGGCAATCCTTTTTCTGCCACCACCTCTTGGAAGCCTTGTGCTGAGCGCCGCAATGGTGGAATATCAGATCTTCCTCCTGAGAATGAAACAAGTGGCTATATATTTATCCATGCAGAGGGTGGCCTAAATCAGCAAAGAATTGCTATATGCAATGCGGTGGCTGTGGCTAAAATAATGAATGCCACACTTATTTTGCCATTGCTGAAGCAGGATCAAATCTGGAAAGACCAAACGAAATTTGAAGATATTTTTGACGTGGACCATTTCATTGATTACTTGAAGGATGATGTGCGAATTGTCCGTGATATCCCTGAGTGGTTCACAGACAAATCAGAGCTATTAACAAGCATAAGACGAACGGTAAAAAACATTCCGAAGTATGCTCCAGCACAGTTTTACATTGATAATGTTCTGCCTCGGATCAAGGAAAAGAAGATAATGGCCCTAAAACCTTTTGTTGATCGGCTTGGGTATGATAATGTTCCTCCAGAAATCAACAGGCTAAGGTGCAGAGTAAACTATCATGCTCTGAAATTTCTTCCTGAGATTGAGCAGATGGCTGATCAACTGGCATCAAGGATGAGAAACCGCACTGGCAGTTCAAATCCTTACATGGCCCTTCACCTTAGATTTGAGAAAGGGATGGTAGGCCTATCGTTCTGTGATTTTGTGGGCACAAGAGAAGAGAAAGCTCAGATGGCTGAATACAGGAAAAAAGAATGGCCTCGACGGTACAAGAACGGTTCCCATCTATGGCAGCTTGCCCTGCAGAAACGGAAGGAAGGACGTTGCCCTCTTGAGCCTGGGGAAGTGGCAGTGATTCTTCGGGCAATGGGCTATCCTAAAGAAACTCAAATTTATGTTGCTTCTGGAAAGGTCTATGGTGGGCAAAACCGGATGGCACCACTCAGGAACATGTTCCCAAATCTGGTTACAAAGGAAGAGTTGGCAACCAAAGAGGAGTTGGATGGTTTCAGGAAGCATGTGACAAGCTTAGCAGCCCTGGACTTCCTGGTTTGCTTGAAGTCTGATGTATTTGTGATGACCCATGGAGGCAACTTTGCAAAACTGATAATTGGTGCTCGTAGGTACATGGGTCATCAGCTTAAATCTATAAAACCGGACAAGGGGCTCATGTCCAAATCTTTTGGGGATCCTTACATGGGCTGGGCCACCTTTGTGGAGGATGTGGTTGTCACCCACCAGACACGAACGGGATTGCCTGAAGAAACTTTCCCAAATTATGACCTCTGGGAGAACCCTTTGACTCCTTGCATGTGTAGAGCCTGA 1659 46.53 MAELRHSSSIGTRATPSPLKRDEDSSPFLPDNPTDHYDRHSSRDRDRDRPFWSNFHSICPYFSDEPRVSPHNYKISLFWILLVILVGFISISAILNGLNSPYLCRKDGIVLRCPRVKEPPSLWGNPFSATTSWKPCAERRNGGISDLPPENETSGYIFIHAEGGLNQQRIAICNAVAVAKIMNATLILPLLKQDQIWKDQTKFEDIFDVDHFIDYLKDDVRIVRDIPEWFTDKSELLTSIRRTVKNIPKYAPAQFYIDNVLPRIKEKKIMALKPFVDRLGYDNVPPEINRLRCRVNYHALKFLPEIEQMADQLASRMRNRTGSSNPYMALHLRFEKGMVGLSFCDFVGTREEKAQMAEYRKKEWPRRYKNGSHLWQLALQKRKEGRCPLEPGEVAVILRAMGYPKETQIYVASGKVYGGQNRMAPLRNMFPNLVTKEELATKEELDGFRKHVTSLAALDFLVCLKSDVFVMTHGGNFAKLIIGARRYMGHQLKSIKPDKGLMSKSFGDPYMGWATFVEDVVVTHQTRTGLPEETFPNYDLWENPLTPCMCRA* 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7122076 7137723 + Vvi1g623 Vvi1g623 769823

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g623 552 PANTHER PROTEIN PECTIC ARABINOGALACTAN SYNTHESIS-RELATED 1 552 - -
Vvi1g623 552 CDD O-FucT_plant 156 490 IPR024709 -
Vvi1g623 552 Gene3D - 295 495 - -
Vvi1g623 552 Pfam GDP-fucose protein O-fucosyltransferase 156 488 IPR019378 -
Vvi1g623 552 PANTHER O-FUCOSYLTRANSFERASE 2-RELATED 1 552 - -
Vvi1g623 552 PIRSF UCP009360 39 552 IPR024709 -
Vvi1g623 552 MobiDBLite consensus disorder prediction 1 45 - -
Vvi1g623 552 MobiDBLite consensus disorder prediction 17 45 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g623 - - - vvi:100257824 1123.23
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g623 . . . . . . . Bma15g00224 . Cmo18g00760 . Cma18g00756 . Car18g00689 . Cpe09g00541 . Bhi07g01801 . . . . . . Cla05g02595 Cam05g2786 Cec05g2824 Cco05g2856 Clacu05g2788 Cmu05g2636 Cre05g2752 Cone13ag1088 Cone19ag1077 . . Lsi04g00604 Csa05g02280 Chy10g00846 Cme10g00584 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009709 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 33