Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g63 ATGATTCAGATTTTTTCTTTGCATGCTTTTAGGATCTCTTTCTCTCTGATCCGAGTGCAGAAAGCAATGGCGTTCGGGAGATTCATCTGTTTGTTCACAGTTGCGGCCTTTCTGGTGTCGCTTCGACCATGCCTATCGGAAAATATCACCAGAGGAAGCTTCCCGAAGGGGTTCGTCTTCGGGACTGCCTCTTCTGCTTTCCAGTATGAAGGAGCCGTGAAAGAGGATGAAAGGGGGCTGTCCGTGTGGGACAATTTTTCTCATACAGCTGGCAAGATACTTGACTTCAGTAATGCAGACGTAGCTGTGGACCATTACCACCTATACCCTGATGATGTACAACTCATGAAGAACATGGGAATGGATGCCTACAGATTTTCCATATCCTGGTCCCGGATTTTCCCTGATGGAACCGGGAAAATAAATCAGGCAGGAGTCGACCATTACAATAGGCTCATCAATGCCTTAATAGCAGAAGGGATTGAACCATATGTGACACTGTACCATTGGGACCTCCCTCAAGCTTTGCAAGACAAATACAATGGATGGCTGGACCCCCAGATCATAAAGGACTTTGCCCTCTACGCTGAGACATGCTTTCAGCAGTTTGGTGACAGGGTGAAGCACTGGATCACATTCAATGAACCACACACCTTCACAGTCCAAGGCTATGATGTAGGGCTGCACGCACCAGGCCATTGTTCCATCCTCCTCCGCCTCTTCTGCAGGGCTGGAAACTCTGCAACTGAGCCTTACATAGTTGCACACCATGTTCTCCTCTCCCATGCAACTGTGGCAGATATATACCGAAAAAAGTACAAGGCTAAGCAGATGGGATCGCTTGGTGTGGCATTTGATGTTATCTGGTTTGAGCCGAAGACGAACTCTACAGAGGACATTGAAGCAACTCAAAGAGCTCAGGATTTTCAGCTGGGCTGGTTCATCGATCCTCTGATGTTTGGGGATTATCCAAAGTCCATGAAATATAGAGTAGGAAGCCGGTTGCCAAACTTTACCAGAGATGAGTCTACTCTCCTTAAAGGGTCTTTGGATTTTGTTGGCATAAACCACTACACAACATTTTATGCAGAAAGCAATGCAACCAACTTGATTGGGTTTCTACTCAACGATTCCCTGGCAGACAGCGGGGCCATTACCCTTCGTGACAAAGATGGACAACCTATAGGAGACAGGGCAAATTCCATCTGGTTGTATATAGTACCTCGTGGGATGAGAAGCTTAATGAATTACATCAAGCAAAAGTATGGGAATCCTCCTGTCATTATCACTGAAAATGGGATGGATGATGGAAACAATCCATTGACTCCTATTAAAGATGCTTTGAAGGATGACAAAAGGATCAAATACCACGATGACTACCTGCAGAGTTTGCTGGCTTCCATTAAAGAGGACGGGTGCAATGTGAAAGGGTATTTTGTATGGTCTCTGTTAGATAATTGGGAGTGGGGAGCTGGATTCACTTCGAGGTTTGGTCTCTTCTTTGTGGATTATAAGGACAAGCTCAAGAGATACCCCAAGAACTCTGTTCAATGGTTCAAGAACTTCCTGAATTCTCCCTAA 1581 45.6 MIQIFSLHAFRISFSLIRVQKAMAFGRFICLFTVAAFLVSLRPCLSENITRGSFPKGFVFGTASSAFQYEGAVKEDERGLSVWDNFSHTAGKILDFSNADVAVDHYHLYPDDVQLMKNMGMDAYRFSISWSRIFPDGTGKINQAGVDHYNRLINALIAEGIEPYVTLYHWDLPQALQDKYNGWLDPQIIKDFALYAETCFQQFGDRVKHWITFNEPHTFTVQGYDVGLHAPGHCSILLRLFCRAGNSATEPYIVAHHVLLSHATVADIYRKKYKAKQMGSLGVAFDVIWFEPKTNSTEDIEATQRAQDFQLGWFIDPLMFGDYPKSMKYRVGSRLPNFTRDESTLLKGSLDFVGINHYTTFYAESNATNLIGFLLNDSLADSGAITLRDKDGQPIGDRANSIWLYIVPRGMRSLMNYIKQKYGNPPVIITENGMDDGNNPLTPIKDALKDDKRIKYHDDYLQSLLASIKEDGCNVKGYFVWSLLDNWEWGAGFTSRFGLFFVDYKDKLKRYPKNSVQWFKNFLNSP* 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 667766 679204 - Vvi1g63 Vvi1g63 769263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g63 526 Gene3D Glycosidases 42 524 - -
Vvi1g63 526 Pfam Glycosyl hydrolase family 1 52 523 IPR001360 GO:0004553|GO:0005975
Vvi1g63 526 PANTHER GLYCOSYL HYDROLASE 33 525 IPR001360 GO:0004553|GO:0005975
Vvi1g63 526 PRINTS Glycosyl hydrolase family 1 signature 349 363 IPR001360 GO:0004553|GO:0005975
Vvi1g63 526 PRINTS Glycosyl hydrolase family 1 signature 427 435 IPR001360 GO:0004553|GO:0005975
Vvi1g63 526 PRINTS Glycosyl hydrolase family 1 signature 450 461 IPR001360 GO:0004553|GO:0005975
Vvi1g63 526 PRINTS Glycosyl hydrolase family 1 signature 472 489 IPR001360 GO:0004553|GO:0005975
Vvi1g63 526 PRINTS Glycosyl hydrolase family 1 signature 496 508 IPR001360 GO:0004553|GO:0005975
Vvi1g63 526 SUPERFAMILY (Trans)glycosidases 47 524 IPR017853 -
Vvi1g63 526 PANTHER BETA-GLUCOSIDASE 6-LIKE 33 525 - -
Vvi1g63 526 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 58 72 IPR033132 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g63 K01188 - vvi:100247567 1044.65