Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g634 ATGCCCATCGATTCTTCGGTTGTAGCAGACATGGACACACCTTCAGTTTCTTCTCTCACTGTTTCCTCTACTTTGAAGCGTAAAAGGCCCCCCAGCATCCAGATCCCTAAGGTCCTGCAAGAAATTCAAATATCCAGGCCGTCTACTCCTCGAAACGACGCCGTTTCTTTCTGCGGTACTGGGGTTGGTGTTTCCTCCATCAGAGGCAAGAAAAAGTTCATGGAAGATGCCCACAAGATCGTTTCTTGCTCATTCGGTAGCTCCAATAAGGGTTTCTTCGGGGTCTATGACGGGCACGGAGGTAAAATGGCAGCTGACTTTGTCGTTGAGAACCTGCATACCAACATTTTCGAAAAGTTGGAGAATTGTGCAGAAGATACGACCAAGGAGGAGGCTGTTAAAGCAGGGTATCTGAAGACAGATGAGGAGTTCTTGAAACAGGGTTTAAGCAGTGGTGCCTGCTGTGTCACAGCCTTGATTGAAGGAAAGGAAATTGTTATTTCAAACTTGGGGGATTGCAGTGCAGTTCTTTGTAGAGGGGGAGTGGCTGAAGCCCTTACAAAAGATCACAGAGCAGAACAGGAGGATGAACGGAAAAGAATAGAGGAAAAGGGAGGATATGTAGAGATCCACCGAGGAGCTTGGAGAATCCATGGGGTACTTTCCGTTTCTAGAAGTATTGGAGATGCTCATCTGAAGGCTTGGGTGTCTGCTGAACCCGACACAAAAATCCTACATTTGACTCCAGACATGCAATTTCTCGTCTTAGCTTCTGATGGACTGTGGGAAAAGGTTGGCAACCAAGAAGCTGTTGATACGGTGATGCGATCAGGGTCAATTGAAAGAAAACTAGGACCCAGTGGCGGTGGACACTTTCAAAAGGAAAACGATGGAGGATATTTTAGCGTGAACACTAGTCCGGCATCAAAGTTACGCAGGATTTCACTACTCAAGCAACCAAAGACAATGAGTCACCCACCGTCCAAGGCACGCAGGATTTCCCTGGTCAAGCGGCTAAACATGAAGACCCAGTCTCCAAGACAAGAGAAGAGCTACAAGAAGTCGTTTGCTTCTAGTAGACTTGTGGCTGCTTGTAAGGAGCTCATGAACCTTGCCCTAACAAGGGGTGGTTTGGACGACATCACAGTGATGATAATTGACCTCACATATTCTTTTACTTCAATGCATCTAGAAATTTCCTTTTCATTTCTGGTTTACTTTTGCCTCTCAGCTGACAGTAGTGCTTGTGAGCTGTGA 1257 46.38 MPIDSSVVADMDTPSVSSLTVSSTLKRKRPPSIQIPKVLQEIQISRPSTPRNDAVSFCGTGVGVSSIRGKKKFMEDAHKIVSCSFGSSNKGFFGVYDGHGGKMAADFVVENLHTNIFEKLENCAEDTTKEEAVKAGYLKTDEEFLKQGLSSGACCVTALIEGKEIVISNLGDCSAVLCRGGVAEALTKDHRAEQEDERKRIEEKGGYVEIHRGAWRIHGVLSVSRSIGDAHLKAWVSAEPDTKILHLTPDMQFLVLASDGLWEKVGNQEAVDTVMRSGSIERKLGPSGGGHFQKENDGGYFSVNTSPASKLRRISLLKQPKTMSHPPSKARRISLVKRLNMKTQSPRQEKSYKKSFASSRLVAACKELMNLALTRGGLDDITVMIIDLTYSFTSMHLEISFSFLVYFCLSADSSACEL* 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7248977 7253673 - Vvi1g634 Vvi1g634 769834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g634 418 PANTHER PROTEIN PHOSPHATASE 2C 16 390 IPR015655 GO:0004722|GO:0006470
Vvi1g634 418 SUPERFAMILY PP2C-like 57 388 IPR036457 -
Vvi1g634 418 PANTHER PROTEIN PHOSPHATASE 2C 14-RELATED 16 390 - -
Vvi1g634 418 Pfam Protein phosphatase 2C 61 277 IPR001932 -
Vvi1g634 418 CDD PP2Cc 61 388 IPR001932 -
Vvi1g634 418 SMART PP2C_4 49 386 IPR001932 -
Vvi1g634 418 ProSitePatterns PPM-type phosphatase domain signature. 92 100 IPR000222 GO:0043169
Vvi1g634 418 Gene3D - 54 391 IPR036457 -
Vvi1g634 418 ProSiteProfiles PPM-type phosphatase domain profile. 61 388 IPR001932 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g634 - - vvi:100254174 750.74