Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g638 ATGGGGCTCTCCAATTTCCACAGCCCAGCTGAAGGTGTGCTTCCTGTGCTAGTAATGAACACGGTTATGTCAGTGGCTCTGTTGAAGAATATGGTGAGATCTGTGCTTCAAGTGATGGGTGCTAATGGGAGCTCTCCCAATTTAGAGGAAGACCCATCAAATGAAGAGTACTCACCAATGTCAGAGAATGCCAAGGAGAGAAGAGTATCAGTAACCCAGTTCAAGTCTTTGAGTCACAGCAGTGGCACTGGCACTGGATGGTGTTCTTCAATGGATTGTTGTGTGTGTCTGTGTAGGTTTGAAGCCGAGGAGGAGGTTAGTGAGTTGTCTTGCAAGCATTTCTTCCACAAGGGTTGCTGGGAAAAGTGGTTTGATAACAAGCATAGTAGCTGCCCTCTATGTAGGTCTATCCTCTAA 417 46.52 MGLSNFHSPAEGVLPVLVMNTVMSVALLKNMVRSVLQVMGANGSSPNLEEDPSNEEYSPMSENAKERRVSVTQFKSLSHSSGTGTGWCSSMDCCVCLCRFEAEEEVSELSCKHFFHKGCWEKWFDNKHSSCPLCRSIL* 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7278722 7279552 + Vvi1g638 Vvi1g638 769838

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g638 138 SUPERFAMILY RING/U-box 92 137 - -
Vvi1g638 138 PANTHER - 1 138 IPR044249 -
Vvi1g638 138 ProSiteProfiles Zinc finger RING-type profile. 93 135 IPR001841 -
Vvi1g638 138 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 49 138 IPR013083 -
Vvi1g638 138 PANTHER F21J9.24-RELATED 1 138 - -
Vvi1g638 138 MobiDBLite consensus disorder prediction 42 62 - -
Vvi1g638 138 Pfam Ring finger domain 92 135 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g638 K16285 XERICO; RING/U-box domain-containing protein [EC:2.3.2.27] - vvi:100852957 278.87
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g638 . . . . . . . . . Cmo18g00766 . . . Car18g00696 Sed06g1693 . Cpe01g01571 Bhi07g01794 Tan04g0160 Cmetu10g1376 . Hepe10g1588 . . . . . . . . . . Cone19ag1068 . . Lsi04g00599 . . Cme10g00580 . . . . . . . . . . . Cma04g01774 . Car04g01798 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010996 1 1 0 0 0 1 2 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31