Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g64 ATGCAAAAAATTATATTGTATACTATTGGGGGAGTAACTATTCTCGAGAATATAGATTCTCGAGAAAATGATGAGTATTACAATTTATTTAGTGTAGAAAAGGAGTATTATAAGAGAGAAACTCCAACAAATAATACACGTGTCAAGATCTCTCTCTCTCTAGTCCGAAGGCAGAAAGCAATGGCGTTCGGAAGATTCATCGGTTTGTTCACGGTTGCGGTGGTTCTGGTGTCGCTTCGGCAATGCCTATCGGAAAATATCACCAGAGGAAGCTTTCCGAAGGGGTTCGTCTTCGGGACTGCCTCTTCTGCTTTCCAGTATGAAGGAGCCGTGAAAGAGGATGGAAGGGGGCTGACCGTGTGGGACAATTTTTCTCATACAGCTGGCAAGATACTTGACTTCAGTAATGCAGATGTAGCTGTGGACCATTACCACCTATACCCTGATGATATACAACTCATGAAGAACATGGGAATGGATGCCTACAGATTTTCCATATCCTGGTCCCGGATTTTCCCTGATGGAACCGGGAAAATAAATCAGGCAGGAGTCGACCATTACAATAGGCTCATCAATGCCTTAATAGCAAAAGGGATTGAACCATATGTGACACTGTACCATTGGGACCTCCCTCAAACTTTGGAAGACAAATACAATGGATGGCTGGACCCCCAGATCATAAAGGACTTTGCCCTCTACGCAGAGACATGCTTTCAGCAGTTTGGTGACAGGGTGAAGCACTGGATCACATTCAATGAGCCACACACCTTCACAGTCCAAGGCTATGATATAGGACTGCAGGCACCGGGTAGGTGCTCCATCCCCCTATTCTTGTTCTGCAGGGCTGGAAACTCTGCAACTGAACCTTACATAGTTGCCCATCATGTCCTCCTCTCTCATGCAACTGTGGCTGATATATACCATAAAAAGTACAAGGCTAAGCAGCAGGGATCACTTGGTGTGGCATTTGATGTTATATGGTTCGAACCAAAGACGAACTCTACAGAGGACATTGAAGCAACTCAAAGAGCTCAGGATTTTCAGCTGGGCTGGTTTATTGACCCTCTGATGTATGGGGATTATCCAAAGTCCCTGAAAGATGGAGTAGGAAGCCGGTTGCCAAACTTTACCAGAGATGAGTCTGCTCTCCTTAAAGGGTCTTTGGATTTTGTTGGCATAAACCACTACACAACATTTTATGCAGAATACGATGCAAACAACTTGACTGGGATGCTACTCAACGATTCCCTGGCAGACAGCAGGGCCATTACCCTTCCTTTCAGCAAAGATGGACAACCTATAGGAGACAGGGCAAATTCTATCTGGTTGTATATAGTACCTCGTGGGATGAGAAGCTTAATGAATTACATCAAGCAAAAGTATGGGAATCCTCCTATCATCATCACTGAAAATGGAATGGATGATGCAAACAATCCATTTATCCCTATTAAAGATGCTTTGAAGGATGAGAAAAGGATCAAATACCACAATGACTACCTTCAGAGTTTGCTGGCTTCCATTAAAGAGGATGGGTGCAATGTGAAAGGGTATTTTGTATGGTCTCTGTTAGATAATTGGGAGTGGGGAGCTGGATTTACTTCAAGGTTTGGTCTCTTCTTTGTGGATTATAAGGACAAGCTCAAGAGATACCCCAAGAATTCTGTTCAATGGTTTAAGAACTTCTTGAATTCTCCCTAA 1698 43.52 MQKIILYTIGGVTILENIDSRENDEYYNLFSVEKEYYKRETPTNNTRVKISLSLVRRQKAMAFGRFIGLFTVAVVLVSLRQCLSENITRGSFPKGFVFGTASSAFQYEGAVKEDGRGLTVWDNFSHTAGKILDFSNADVAVDHYHLYPDDIQLMKNMGMDAYRFSISWSRIFPDGTGKINQAGVDHYNRLINALIAKGIEPYVTLYHWDLPQTLEDKYNGWLDPQIIKDFALYAETCFQQFGDRVKHWITFNEPHTFTVQGYDIGLQAPGRCSIPLFLFCRAGNSATEPYIVAHHVLLSHATVADIYHKKYKAKQQGSLGVAFDVIWFEPKTNSTEDIEATQRAQDFQLGWFIDPLMYGDYPKSLKDGVGSRLPNFTRDESALLKGSLDFVGINHYTTFYAEYDANNLTGMLLNDSLADSRAITLPFSKDGQPIGDRANSIWLYIVPRGMRSLMNYIKQKYGNPPIIITENGMDDANNPFIPIKDALKDEKRIKYHNDYLQSLLASIKEDGCNVKGYFVWSLLDNWEWGAGFTSRFGLFFVDYKDKLKRYPKNSVQWFKNFLNSP* 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 679482 685333 - Vvi1g64 Vvi1g64 769264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g64 565 Gene3D Glycosidases 78 563 - -
Vvi1g64 565 PRINTS Glycosyl hydrolase family 1 signature 387 401 IPR001360 GO:0004553|GO:0005975
Vvi1g64 565 PRINTS Glycosyl hydrolase family 1 signature 466 474 IPR001360 GO:0004553|GO:0005975
Vvi1g64 565 PRINTS Glycosyl hydrolase family 1 signature 489 500 IPR001360 GO:0004553|GO:0005975
Vvi1g64 565 PRINTS Glycosyl hydrolase family 1 signature 511 528 IPR001360 GO:0004553|GO:0005975
Vvi1g64 565 PRINTS Glycosyl hydrolase family 1 signature 535 547 IPR001360 GO:0004553|GO:0005975
Vvi1g64 565 Pfam Glycosyl hydrolase family 1 90 562 IPR001360 GO:0004553|GO:0005975
Vvi1g64 565 PANTHER GLYCOSYL HYDROLASE 69 564 IPR001360 GO:0004553|GO:0005975
Vvi1g64 565 PANTHER BETA-GLUCOSIDASE 6-LIKE 69 564 - -
Vvi1g64 565 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 96 110 IPR033132 -
Vvi1g64 565 SUPERFAMILY (Trans)glycosidases 86 562 IPR017853 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g64 K01188 - vvi:100232900 1050.43