Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g65 ATGGAGGAGGAAGATGAAGATCCACCGCTGGCAGTTGAAATCAACAAATCAACACCCCCACAATCCCAAAACGACGACGTTTCAGTGGGCGTAACCGTCATCACAGGCTATCTTGGCGCCGGCAAATCCACTTTTGTTAATTTTATTTTGAATTCACAACACGGAAAGAGGATTGCTGTTATATTGAATGAGTTTGGTGAAGAGATTGGAGTAGAAAGGGCAATGATAAATGAAGGGGACAATGGAGCACTTGTGGAAGAGTGGGTTGAGCTTGCAAATGGGTGCATCTGTTGCACTGTCAAGCATAGTCTGGTTCAAGCTCTGGAGCAACTCGTGCAGATGAAGGAAAGGCTTGATCATATTTTACTAGAGACCACTGGGTTAGCAAACCCTGCTCCTCTTGCTTCTGTTCTTTGGTTGGATGATCAGTTGGAATCTTCAGTCAGACTTGATTCTATTATTACTGTTGTGGATGCAAAAAACCTCCGTTTTCAGCTGAATTCACATCATGGTTCATCTTCATTTCCCGAAGCTTTTCTTCAAATAGCGTTTGCGGATGTTGTAATTCTTAACAAGGTTGATTTGGTTTCTCCAGAGGAATCTGGAGGTGTTCTGGAGGAACTGGAGAAGGAGATACATAACATTAACTCCCTGGCAAACATCATACATTCTGTTCGGTGTCAAGTTGACTTGTCTAAGATATTGGACTGCCGGGCCTATGATGCTACTCATGCCACACATTTAGAAGCATTATTAGAAGAAAATCAATCTCTATCAAGCAAGGACCTTCATGATAGTAATGTTCGAACTTTGTGCATCAGTGAGCCACTGCCTGTTGATCTTGACAAGGTTCGTTTGTGGCTTGAGGAGATTCTTTGGGATAAGAAGTATAGCATGGATGTCTACCGTTGCAAAGGGGTTTTACGTGTTCTTGACTCAGATCAACTACATACATTGCAGGCTGTGAGGGAGATATATGAGATTGTTCCAACTCGTAAATGGAAAAATGAAGAAAATCAGATGAACAAGATTGTTTTTATAGGTCATAATCTGAACGAGGATGCTCTTACAAATTCCTTCAGAGCTTGCATGTCGATAAGCAACGGGCTGGTTTTTTATTACCTTTTAAAAAACGTCGTCAAAACAAGCGTGGTTTATAATAACTACGGTGTGGCGCATGAACACCGGATACTTTTTTTTTCCCAGATAAATCCTAAAATCACCCGAATGTCAGTTCTCTCTAAAAACCCTAATCCCTCTTGGTCTCACTCTTCCTCGACCGTGGAGAAGGAGAAGAAAGCGAGTGATTCAACAATCTCCCTTCCTTCGCCAACTGTAGAACGCTTTAGTTCCAAGGAGCATCTCAACACCTCACAGACCAAACCCCATATCTCCACACAAATGGCACTGGTTGTGATTTGTGGGCAACCCTGCAGTGGGAAGTCAACTGCTGCAGTCTGCCTAGATGGAGCTCTAAAAGACTCGGAATCCAAACTGACGGTCAGGGTAATTGATGAAGCCTCCTTTCATCTTGATCGCAATCAATGCTACGCCAATATGACTGAAGAAAAAATGTTGAGAGGAGTGCTCAGATCTGAAATATTGCGTGCTGAGATCATCAATGCTATTGTGGAAGCACAATCCCAGGCAGTTGGAGGGCCTGTAAATGGCATCTCTCTGGGCCAGGGATTAGCACCTATCAATATCTCAAAATCAGTTGGACTGCCAGAGCTACGAAGGCTGCGACGAACATTCATAAAACTGACTGGACAGACGAGCTTAAGCGGGCCGCCCCCACCATCTGATTCAGACAGTGCAAAGAGAATGTTTGTGGATTACTTGAACAGAGAATTAGGAAGTGCTTAA 1866 43.41 MEEEDEDPPLAVEINKSTPPQSQNDDVSVGVTVITGYLGAGKSTFVNFILNSQHGKRIAVILNEFGEEIGVERAMINEGDNGALVEEWVELANGCICCTVKHSLVQALEQLVQMKERLDHILLETTGLANPAPLASVLWLDDQLESSVRLDSIITVVDAKNLRFQLNSHHGSSSFPEAFLQIAFADVVILNKVDLVSPEESGGVLEELEKEIHNINSLANIIHSVRCQVDLSKILDCRAYDATHATHLEALLEENQSLSSKDLHDSNVRTLCISEPLPVDLDKVRLWLEEILWDKKYSMDVYRCKGVLRVLDSDQLHTLQAVREIYEIVPTRKWKNEENQMNKIVFIGHNLNEDALTNSFRACMSISNGLVFYYLLKNVVKTSVVYNNYGVAHEHRILFFSQINPKITRMSVLSKNPNPSWSHSSSTVEKEKKASDSTISLPSPTVERFSSKEHLNTSQTKPHISTQMALVVICGQPCSGKSTAAVCLDGALKDSESKLTVRVIDEASFHLDRNQCYANMTEEKMLRGVLRSEILRAEIINAIVEAQSQAVGGPVNGISLGQGLAPINISKSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDSDSAKRMFVDYLNRELGSA* 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 688227 696254 + Vvi1g65 Vvi1g65 769265

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g65 621 CDD CobW-like 31 238 - -
Vvi1g65 621 PANTHER COBW DOMAIN-CONTAINING PROTEIN 1-RELATED 12 365 - -
Vvi1g65 621 SMART CobW_C_3 268 364 IPR011629 -
Vvi1g65 621 MobiDBLite consensus disorder prediction 1 25 - -
Vvi1g65 621 Gene3D - 453 555 IPR027417 -
Vvi1g65 621 Gene3D - 249 365 IPR036627 -
Vvi1g65 621 Pfam CobW/HypB/UreG, nucleotide-binding domain 31 222 IPR003495 -
Vvi1g65 621 Pfam Chromatin associated protein KTI12 468 536 IPR013641 -
Vvi1g65 621 Pfam Chromatin associated protein KTI12 538 615 IPR013641 -
Vvi1g65 621 MobiDBLite consensus disorder prediction 437 461 - -
Vvi1g65 621 Gene3D - 28 241 IPR027417 -
Vvi1g65 621 MobiDBLite consensus disorder prediction 414 461 - -
Vvi1g65 621 SUPERFAMILY Hypothetical protein YjiA, C-terminal domain 268 364 - -
Vvi1g65 621 PANTHER COBW-RELATED 12 365 - -
Vvi1g65 621 Coils Coil 104 124 - -
Vvi1g65 621 Pfam Cobalamin synthesis protein cobW C-terminal domain 269 363 IPR011629 -
Vvi1g65 621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 248 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g65 - - - vvi:100264718 730.324
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g65 . Blo16g01091 . Bda11g01182 Bpe13g01380 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01182 . Bpe02g02319 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008535 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 35