Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g65 ATGGAGGAGGAAGATGAAGATCCACCGCTGGCAGTTGAAATCAACAAATCAACACCCCCACAATCCCAAAACGACGACGTTTCAGTGGGCGTAACCGTCATCACAGGCTATCTTGGCGCCGGCAAATCCACTTTTGTTAATTTTATTTTGAATTCACAACACGGAAAGAGGATTGCTGTTATATTGAATGAGTTTGGTGAAGAGATTGGAGTAGAAAGGGCAATGATAAATGAAGGGGACAATGGAGCACTTGTGGAAGAGTGGGTTGAGCTTGCAAATGGGTGCATCTGTTGCACTGTCAAGCATAGTCTGGTTCAAGCTCTGGAGCAACTCGTGCAGATGAAGGAAAGGCTTGATCATATTTTACTAGAGACCACTGGGTTAGCAAACCCTGCTCCTCTTGCTTCTGTTCTTTGGTTGGATGATCAGTTGGAATCTTCAGTCAGACTTGATTCTATTATTACTGTTGTGGATGCAAAAAACCTCCGTTTTCAGCTGAATTCACATCATGGTTCATCTTCATTTCCCGAAGCTTTTCTTCAAATAGCGTTTGCGGATGTTGTAATTCTTAACAAGGTTGATTTGGTTTCTCCAGAGGAATCTGGAGGTGTTCTGGAGGAACTGGAGAAGGAGATACATAACATTAACTCCCTGGCAAACATCATACATTCTGTTCGGTGTCAAGTTGACTTGTCTAAGATATTGGACTGCCGGGCCTATGATGCTACTCATGCCACACATTTAGAAGCATTATTAGAAGAAAATCAATCTCTATCAAGCAAGGACCTTCATGATAGTAATGTTCGAACTTTGTGCATCAGTGAGCCACTGCCTGTTGATCTTGACAAGGTTCGTTTGTGGCTTGAGGAGATTCTTTGGGATAAGAAGTATAGCATGGATGTCTACCGTTGCAAAGGGGTTTTACGTGTTCTTGACTCAGATCAACTACATACATTGCAGGCTGTGAGGGAGATATATGAGATTGTTCCAACTCGTAAATGGAAAAATGAAGAAAATCAGATGAACAAGATTGTTTTTATAGGTCATAATCTGAACGAGGATGCTCTTACAAATTCCTTCAGAGCTTGCATGTCGATAAGCAACGGGCTGGTTTTTTATTACCTTTTAAAAAACGTCGTCAAAACAAGCGTGGTTTATAATAACTACGGTGTGGCGCATGAACACCGGATACTTTTTTTTTCCCAGATAAATCCTAAAATCACCCGAATGTCAGTTCTCTCTAAAAACCCTAATCCCTCTTGGTCTCACTCTTCCTCGACCGTGGAGAAGGAGAAGAAAGCGAGTGATTCAACAATCTCCCTTCCTTCGCCAACTGTAGAACGCTTTAGTTCCAAGGAGCATCTCAACACCTCACAGACCAAACCCCATATCTCCACACAAATGGCACTGGTTGTGATTTGTGGGCAACCCTGCAGTGGGAAGTCAACTGCTGCAGTCTGCCTAGATGGAGCTCTAAAAGACTCGGAATCCAAACTGACGGTCAGGGTAATTGATGAAGCCTCCTTTCATCTTGATCGCAATCAATGCTACGCCAATATGACTGAAGAAAAAATGTTGAGAGGAGTGCTCAGATCTGAAATATTGCGTGCTGAGATCATCAATGCTATTGTGGAAGCACAATCCCAGGCAGTTGGAGGGCCTGTAAATGGCATCTCTCTGGGCCAGGGATTAGCACCTATCAATATCTCAAAATCAGTTGGACTGCCAGAGCTACGAAGGCTGCGACGAACATTCATAAAACTGACTGGACAGACGAGCTTAAGCGGGCCGCCCCCACCATCTGATTCAGACAGTGCAAAGAGAATGTTTGTGGATTACTTGAACAGAGAATTAGGAAGTGCTTAA 1866 43.41 MEEEDEDPPLAVEINKSTPPQSQNDDVSVGVTVITGYLGAGKSTFVNFILNSQHGKRIAVILNEFGEEIGVERAMINEGDNGALVEEWVELANGCICCTVKHSLVQALEQLVQMKERLDHILLETTGLANPAPLASVLWLDDQLESSVRLDSIITVVDAKNLRFQLNSHHGSSSFPEAFLQIAFADVVILNKVDLVSPEESGGVLEELEKEIHNINSLANIIHSVRCQVDLSKILDCRAYDATHATHLEALLEENQSLSSKDLHDSNVRTLCISEPLPVDLDKVRLWLEEILWDKKYSMDVYRCKGVLRVLDSDQLHTLQAVREIYEIVPTRKWKNEENQMNKIVFIGHNLNEDALTNSFRACMSISNGLVFYYLLKNVVKTSVVYNNYGVAHEHRILFFSQINPKITRMSVLSKNPNPSWSHSSSTVEKEKKASDSTISLPSPTVERFSSKEHLNTSQTKPHISTQMALVVICGQPCSGKSTAAVCLDGALKDSESKLTVRVIDEASFHLDRNQCYANMTEEKMLRGVLRSEILRAEIINAIVEAQSQAVGGPVNGISLGQGLAPINISKSVGLPELRRLRRTFIKLTGQTSLSGPPPPSDSDSAKRMFVDYLNRELGSA* 622
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 688227 696254 + Vvi1g65 Vvi1g65 769265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g65 621 CDD CobW-like 31 238 - -
Vvi1g65 621 PANTHER COBW DOMAIN-CONTAINING PROTEIN 1-RELATED 12 365 - -
Vvi1g65 621 SMART CobW_C_3 268 364 IPR011629 -
Vvi1g65 621 MobiDBLite consensus disorder prediction 1 25 - -
Vvi1g65 621 Gene3D - 453 555 IPR027417 -
Vvi1g65 621 Gene3D - 249 365 IPR036627 -
Vvi1g65 621 Pfam CobW/HypB/UreG, nucleotide-binding domain 31 222 IPR003495 -
Vvi1g65 621 Pfam Chromatin associated protein KTI12 468 536 IPR013641 -
Vvi1g65 621 Pfam Chromatin associated protein KTI12 538 615 IPR013641 -
Vvi1g65 621 MobiDBLite consensus disorder prediction 437 461 - -
Vvi1g65 621 Gene3D - 28 241 IPR027417 -
Vvi1g65 621 MobiDBLite consensus disorder prediction 414 461 - -
Vvi1g65 621 SUPERFAMILY Hypothetical protein YjiA, C-terminal domain 268 364 - -
Vvi1g65 621 PANTHER COBW-RELATED 12 365 - -
Vvi1g65 621 Coils Coil 104 124 - -
Vvi1g65 621 Pfam Cobalamin synthesis protein cobW C-terminal domain 269 363 IPR011629 -
Vvi1g65 621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 30 248 IPR027417 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g65 - - vvi:100264718 730.324