Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g652 ATGGCTTCACTTCACTTCCTTCTTCGCCCATCCTCCAATCCCAATCTTCTCGCTTTACCCTCCAGATCTCGACCGGTTCAATGTGCTAACGAGCGCCAGGCGCTGTTTAGCCGCATTGCTCCTGTTTACGATAATCTGAATGATTTCTTGAGTTTGGGGCAGCACCGGATATGGAAAAGAATGGCGGTATCATGGAGCGGGGCCAAGAGGGGAGACGATGTGTTGGATTTGTGTTGTGGAAGTGGGGATTTGGCATTTCTACTATCAGAAAGAGTTGGGTCTGATGGCAAGGTGATAGGTTTTGATTTCTCAAGGGAGCAATTATCGGTTGCTTCATCTCGACAACACTTGCTCTCAAAAGCCTGCTACAAGAACATTGAGTGGATTGAGGGCGATGCAACTAAGTTGCCTTTTTCTGATTGTTCTTTTGATGCCATTACCATGGGTTATGGGCTACGAAATGTGTTAGATAGAGGCAAGGCCATGCAAGAGATGTTTCGAGTCTTGAAACCAGGGTCAAGGGTATCCATCCTCGATTTCAATAAAAGCACTAAACCATTTATTACATCAATTCAGGAATGGATGATTGATAATGTAGTTGTTCCTGTTGCAACTGGTTATGGCCTTGCTGATGAGTATGCATATTTGAAAAGCTCAGTTCAGGAATTCTTAACAGGGAAGGAGTTGGAGAAGCTTGCTTTAGAAATGGGATTTTCCAATGCCAAACATTATGAGATTGGTGGAGGCATCATGGGGAACTTAGTAGCCAAACGGTAG 777 44.53 MASLHFLLRPSSNPNLLALPSRSRPVQCANERQALFSRIAPVYDNLNDFLSLGQHRIWKRMAVSWSGAKRGDDVLDLCCGSGDLAFLLSERVGSDGKVIGFDFSREQLSVASSRQHLLSKACYKNIEWIEGDATKLPFSDCSFDAITMGYGLRNVLDRGKAMQEMFRVLKPGSRVSILDFNKSTKPFITSIQEWMIDNVVVPVATGYGLADEYAYLKSSVQEFLTGKELEKLALEMGFSNAKHYEIGGGIMGNLVAKR* 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7494006 7502229 - Vvi1g652 Vvi1g652 769852

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g652 258 Hamap 2-phytyl-1,4-naphtoquinone methyltransferase [menG]. 31 258 IPR032904 GO:0042372|GO:0052624
Vvi1g652 258 PANTHER METHYLTRANSFERASE 4 258 - -
Vvi1g652 258 ProSitePatterns ubiE/COQ5 methyltransferase family signature 1. 43 58 IPR023576 GO:0008168
Vvi1g652 258 Gene3D Vaccinia Virus protein VP39 38 258 IPR029063 -
Vvi1g652 258 CDD AdoMet_MTases 73 177 - -
Vvi1g652 258 Hamap Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE [ubiE]. 23 258 IPR004033 GO:0008168
Vvi1g652 258 Pfam ubiE/COQ5 methyltransferase family 33 252 IPR004033 GO:0008168
Vvi1g652 258 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 23 250 IPR029063 -
Vvi1g652 258 PANTHER 2-PHYTYL-1,4-BETA-NAPHTHOQUINONE METHYLTRANSFERASE, CHLOROPLASTIC 4 258 - -
Vvi1g652 258 TIGRFAM MenG_MenH_UbiE: ubiquinone/menaquinone biosynthesis methyltransferase 34 257 IPR004033 GO:0008168
Vvi1g652 258 ProSiteProfiles UbiE family SAM-binding methyltransferase profile. 21 258 IPR004033 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g652 K23095 MENG, menG; demethylphylloquinol methyltransferase [EC:2.1.1.329] - vvi:100246556 518.85
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g652 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone8ag0678 . . . . . . . . . . . . Bma06g00608 . . . . Cma05g00031 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006920 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 3 37