Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g653 ATGGGAAAAGTAAAAGTGCGGAAGCACATCATCAAGCCCCAAAACATCAGTCCTTTTAGAAAGTTGCAGAGATCAATGTTATCACATTTTTTTAATTGCGGTCTGCCCCAAAGCTTGCGCGTCATTTATCTCTTTATACTTTCAACTTCATCGTTCACACAACTCCGCTCTCTGCAGATCTCGTGCACTAAAAGACTTCCAAAAATGAAGATGAAGCAAGCCCACCCATCAGCCCCTTCCCCTTCTCTTCTCTTCCTTTTTATCATAACTCTATCGGTGATAGAACTATCCGCCGGGGACCCCAGATCACGAATGATCCAAATCACGTGTGCGAACCAGCCAGAGCACAATTCAACCATCTTCGTCCCCAATTTTGTGGCAATGATGGAAAATATCAGTAACCAAGTGCGCACTTCTGGTTTTGGCGTGGCTATTTCTGGCTCAGGACCTGATGCTAACTACGGTCTTGCCCAATGCTATGGAGATCTGTCTTTGCTTGATTGTGTATTATGCTATGCGGAGGCGCGAACAGTTCTTCCCCAGTGCTTTCCTTACAATGGGGGTCGCATTTACCTTGATGGTTGCTTTATGCGAGCTCAAAATTACAGCTTCATTGAGGAGTATACAGGGCCAAGTGACCATGCTTTGTGTGGAAACGAAACCCGAAAGAACTCCACGTTCCAGGAGTCTGCAAGGCAGGCTATAAAGCAAGCAGTTGCTGATGCACCAAACAATAATGGGTATGCAAGGAGTAAGGTGATAGTGCCGGGAACAGCAAATGAGTCGGCCTATGTGCTGGCTGATTGTTGGAGGACTTTGAATGCAAGCTCATGTAGGGCATGTCTGGAGAATGCATCGTCATCGATATTGGGATGCTTGCCTTGGTCTGAAGGGCGGGCACTGAACACAGGGTGCTTCATGAGGTACTCAGATACAGATTTCCTCAACAAGGAACCAGATAATGGAAGTTCAAGAGGGACTGTAATAATAATAGTAGTACCTGCTGTAAGTGCTGTGATTGTTCTTCTAGTACTGGGAGCGATTGGAGTTTATATCTGGAAGCAAAGAAAGATCCAAAAGAAAAGGAGAGGTTCCAACGATGCTATAAAATTAGTTAAGACCCTCCATGACAGTAGCTTGAACTTCAAATATGCTACACTTGAGAAGGCCACAGGATCTTTTGATAATGAGAACAAGCTTGGACAAGGAGGATTTGGGACTGTTTATAAGGGAGTTCTGACTGATGGAAGAGAGATTGCTGTGAAGAGGCTTTTCTTCAACAACAGACACAGAGCAGCAGATTTCTATAATGAAGTTAACATAATAAGCAGTGTTGAGCACAAAAATCTAGTCAGGCTGTTGGGGTGCAGTTGCTCAGGGCCTGAAAGCCTTCTCGTCTATGAATATCTGCCAAATAAGAGTCTTGATCGCTTCATCTTCGATACAAACAGAGGTAAAGCACTGAACTGGGAAAAGAGATGTGAGATAATCATTGGGACAGCAGAAGGTCTGGCCTACCTTCATGAAAATTCGACGAACAGAATTATCCACAGAGATATAAAAGCCAGTAATATCTTGTTGGATTCGAAGATGCGTGCTAAAATAGCTGATTTTGGGCTGGCCAGGTCTTTCCAAGAAGATAAGAGTCATATAACCACTGCCATTGCAGGAACACTAGGATATATGGCTCCAGAGTACCTGGCCCATGGCCAGTTAACAGAAAAGGTAGATGTCTACAGCTTTGGTGTGCTCTTGTTAGAGATTGTCACAGGAAGGCAGAACAACAGGAGCAAAACTTCAGAATACTCGGACAGCATAGTCACTATCGCATGGAAGCATTTCCAGCTAGGGACCTTGGAGGAACTTTTTGATCCGAATTTAATGTTGCATAACTACCACAATGGCAACATTAAGAACGAAGTTTTGAGAGTGATGCAGATAGCACTTCTTTGCACCCAAGAGGCTCCATCATTACGACCATCAATGACCATGGAACTTAATGAGGCATGTGCGAACCCATCTTACCCCCTCAATGCTGCCATTTCTGGTTCAGTTGCCAATATGTCCCACAGTTCTTTCTACCCCAGATGA 2091 44.33 MGKVKVRKHIIKPQNISPFRKLQRSMLSHFFNCGLPQSLRVIYLFILSTSSFTQLRSLQISCTKRLPKMKMKQAHPSAPSPSLLFLFIITLSVIELSAGDPRSRMIQITCANQPEHNSTIFVPNFVAMMENISNQVRTSGFGVAISGSGPDANYGLAQCYGDLSLLDCVLCYAEARTVLPQCFPYNGGRIYLDGCFMRAQNYSFIEEYTGPSDHALCGNETRKNSTFQESARQAIKQAVADAPNNNGYARSKVIVPGTANESAYVLADCWRTLNASSCRACLENASSSILGCLPWSEGRALNTGCFMRYSDTDFLNKEPDNGSSRGTVIIIVVPAVSAVIVLLVLGAIGVYIWKQRKIQKKRRGSNDAIKLVKTLHDSSLNFKYATLEKATGSFDNENKLGQGGFGTVYKGVLTDGREIAVKRLFFNNRHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEYLPNKSLDRFIFDTNRGKALNWEKRCEIIIGTAEGLAYLHENSTNRIIHRDIKASNILLDSKMRAKIADFGLARSFQEDKSHITTAIAGTLGYMAPEYLAHGQLTEKVDVYSFGVLLLEIVTGRQNNRSKTSEYSDSIVTIAWKHFQLGTLEELFDPNLMLHNYHNGNIKNEVLRVMQIALLCTQEAPSLRPSMTMELNEACANPSYPLNAAISGSVANMSHSSFYPR* 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7502367 7512803 + Vvi1g653 Vvi1g653 769853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g653 696 Gene3D - 102 204 IPR038408 -
Vvi1g653 696 Gene3D - 213 314 IPR038408 -
Vvi1g653 696 ProSiteProfiles Gnk2-homologous domain profile. 103 204 IPR002902 -
Vvi1g653 696 SUPERFAMILY Protein kinase-like (PK-like) 378 667 IPR011009 -
Vvi1g653 696 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 83 667 - -
Vvi1g653 696 Pfam Protein kinase domain 395 664 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g653 696 ProSiteProfiles Gnk2-homologous domain profile. 209 314 IPR002902 -
Vvi1g653 696 Gene3D Transferase(Phosphotransferase) domain 1 470 674 - -
Vvi1g653 696 CDD STKc_IRAK 400 664 - -
Vvi1g653 696 Gene3D Phosphorylase Kinase; domain 1 354 469 - -
Vvi1g653 696 SMART serkin_6 394 671 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g653 696 ProSiteProfiles Protein kinase domain profile. 394 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g653 696 Pfam Salt stress response/antifungal 220 311 IPR002902 -
Vvi1g653 696 Pfam Salt stress response/antifungal 116 202 IPR002902 -
Vvi1g653 696 ProSitePatterns Protein kinases ATP-binding region signature. 400 422 IPR017441 GO:0005524
Vvi1g653 696 ProSitePatterns Serine/Threonine protein kinases active-site signature. 515 527 IPR008271 GO:0004672|GO:0006468
Vvi1g653 696 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 2 83 667 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g653 Vvi14g1326 ECH
Vvi1g653 Vvi17g774 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76515 PF00069 Pkinase 3.20E-49 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g653 - - vvi:100251695 1209.9