Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g659 ATGGAGGAAGTGTACGGTCTCAATTCGACGTCCGACTACTCCGACAAGGTGCTGATGTCGCCGGAGAATCTGATACTGCCGGCGGATTACCAGAGCTTCTTCTCCTCCGCAGCCGCCTTTCGTGACTATCGGATTCCCGTGTTTGGATCGAACGAGCTAATTTCGGTGGCTTCTGCTATATCAGAGACTGCTTCGATCACGCCCGAAATTCAACGAGAAGAAGATGTGTCTTCTGTGATCAAAGCCAAAATCGCTTCCCATCCTTGCTACCCGAGATTGCTCGAAGCTTACATCGATTGTCAGAAGGTAGGGGCGCCTCCGGAAATTGCGTGTCTGTTAGACGAAATCCGGCGAGAAAACGACGTTTGTAAGAGAGACGCTGTTTCAACGTGCTTAGGAGCCGATCCTGAGCTCGACGAGTTCATGGAAACATACTGTGATATGTTGGAGAAGTATAAATCAGATCTCGCAAGGCCTTTTGATGAAGCTACGACCTTCTTGAACAAGATTGAAATGCAGCTGGGCAATCTCTGCAACGATGCATCCATACGAAGCCTTCCCGATGAAGCTGTTGTGTCATCTGATGAGGATTTTAGTGGAGGAGAGGAGGTACAAGAGGCTCAACCAAGGGGTGAAGACCAAGAACTTAAGGAGAGGCTCTTACGGAGGTTTGGTGGTCGAATAAGTTCCCTCAAGCTGGAGTTTTCAAAAAAGAAGAAAAAAGGAAAGCTGCCAAAAGAAGCAAGGCAAACACTACTTGAGTGGTGGAACCTTCATTATAAATGGCCATACCCAACGGAAGCTGATAAAATTGCACTTGCTGAAACAACGGGTCTGGACCAGAAGCAAATTAACAATTGGTTTATAAATCAACGAAAGCGGCACTGGAAACCATCAGAGAACATGCAATTTGCTGTTATGGATAACCATTCAGGACAATTCTTTACAGATGACTGA 957 46.6 MEEVYGLNSTSDYSDKVLMSPENLILPADYQSFFSSAAAFRDYRIPVFGSNELISVASAISETASITPEIQREEDVSSVIKAKIASHPCYPRLLEAYIDCQKVGAPPEIACLLDEIRRENDVCKRDAVSTCLGADPELDEFMETYCDMLEKYKSDLARPFDEATTFLNKIEMQLGNLCNDASIRSLPDEAVVSSDEDFSGGEEVQEAQPRGEDQELKERLLRRFGGRISSLKLEFSKKKKKGKLPKEARQTLLEWWNLHYKWPYPTEADKIALAETTGLDQKQINNWFINQRKRHWKPSENMQFAVMDNHSGQFFTDD* 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7552214 7562392 - Vvi1g659 Vvi1g659 769859
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g659 318 MobiDBLite consensus disorder prediction 193 214 - -
Vvi1g659 318 SMART KNOX2_2 128 179 IPR005541 GO:0003677|GO:0005634
Vvi1g659 318 CDD homeodomain 247 299 IPR001356 GO:0003677
Vvi1g659 318 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 318 - -
Vvi1g659 318 SUPERFAMILY Homeodomain-like 236 311 IPR009057 -
Vvi1g659 318 Pfam KNOX1 domain 80 121 IPR005540 GO:0003677|GO:0005634
Vvi1g659 318 SMART HOX_1 237 302 IPR001356 GO:0003677
Vvi1g659 318 Gene3D - 233 307 - -
Vvi1g659 318 Pfam ELK domain 215 236 IPR005539 GO:0003677
Vvi1g659 318 ProSiteProfiles ELK domain profile. 215 235 IPR005539 GO:0003677
Vvi1g659 318 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 318 - -
Vvi1g659 318 ProSitePatterns 'Homeobox' domain signature. 273 296 IPR017970 GO:0000981|GO:0006355
Vvi1g659 318 SMART KNOX1_2 78 122 IPR005540 GO:0003677|GO:0005634
Vvi1g659 318 Pfam Homeobox KN domain 255 294 IPR008422 GO:0003677|GO:0006355
Vvi1g659 318 ProSiteProfiles 'Homeobox' domain profile. 235 298 IPR001356 GO:0003677
Vvi1g659 318 SMART ELK_2 215 236 IPR005539 GO:0003677
Vvi1g659 318 Pfam KNOX2 domain 132 178 IPR005541 GO:0003677|GO:0005634
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g659 Vvi17g773 ECH
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14524 PF03791 KNOX2 8.80E-25 No_clan Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g659 - - vri:117903949 626.32