Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g661 ATGGAAAGCAGGGGCTATGTGTTGTGGGGAGTCGGATTACTGCTTTTGACATTGATGGAGGGTTCTTCTGCTACTCTTTCTCCTTCTGGTATCAACTATGAAGTTGTAGCTTTGATGACTATAAAAAATAATCTGAATGACCCATATAATGTTTTGGAGAACTGGGATATTAATTCAGTGGATCCTTGTAGCTGGAGGATGGTTACTTGCTCTTCCGACGGCTATGTTTCTGCTCTGGGGCTGCCCAGTCAAAGTTTGTCTGGAACCTTATCTCCATGGATTGGGAACCTCACCAACTTGCAATCTGTGTTGCTGCAGAATAATGCCATTTCTGGTCCTATTCCTGATTCAATTGGGAAGTTGGAAAAGCTTGAGACACTTGATCTCTCCCACAATAAATTTGATGGTGGAATACCCAGTTCTTTGGGGGGACTTAAGAAACTGAATTATTTGCGACTAAACAACAACAGCCTTACTGGACCATGCCCTGAGTCTCTTTCCCAGGTTGAAGGCCTCTCCCTCGTTGACCTTTCTTTTAATAATCTGAGTGGTTCCATGCCAAAAATATCTGCAAGAACCTTCAAAATTATTGGTAACCCTTCACTTTGTGGTGCCAATGCCACAAACAACTGTTCTGCAATCTCTCCAGAGCCACTTTCTTTTCCTCCAGATGCTCTAAGAGCTCATTCAGATTCTGGATCTAAGAGCCACCGTGTGGCTATTGCGTTTGGTGCAAGTTTTGGTGCTGCTCTTTTAATCATAATTATTGTTGGGCTGTCAGTTTGGTGGCGATATAGGAGGAACCAACAAATTTTCTTTGATGTTAATGATCAATATGACCCAGAGGTACGCTTGGGCCATCTGAGGAGGTATACATTTAAGGAACTTAGGGCTGCAACAGATCATTTCAACCCAAAGAATATTTTAGGAAGGGGTGGATTTGGAATTGTATACAAGGGTTGCTTAAATGATAGAACTCTGGTGGCTGTTAAAAGGCTGAAAGACTATAATGCCGTAGGTGGTGAAATCCAATTTCAAACAGAAGTTGAGATGATAAGTTTGGCTGTCCATCGGAATCTTCTCCGGCTTTGTGGATTCTGTACAACAGAGAGCGAGCGGCTCCTTGTTTACCCCTATATGCCTAATGGGAGTGTAGCATCTCGATTAAGAGATCAAATCCATGGCAGGCCAGCGTTAGACTGGTCAAGGCGAAAGAGGATAGCTTTAGGCACAGCAAGGGGGCTACTTTATTTGCATGAGCAGTGTGACCCCAAAATTATCCACCGTGATGTCAAGGCAGCCAACATTTTGCTGGATGAAGACTTTGAAGCAGTTGTTGGAGATTTCGGGTTGGCAAAACTGTTGGATCATAGAGAGTCACATGTGACCACAGCAGTGCGGGGCACTGTTGGCCACATTGCTCCTGAATACTTGTCAACAGGTCAGTCATCAGAAAAGACAGATGTGTTTGGGTTTGGAATCTTGCTCCTTGAACTAATCACAGGTCAGAAGGCTTTGGATTTTGGACGGGCGGCAAACCAGAAAGGAGTAATGCTTGATTGGGTAAAGAAGCTCCATCAAGAGGGAAAGCTCAACCTGATGGTGGATAAAGATTTAAAGAACAATTTTGACAGGGTTGAATTAGAAGAAATGGTTAAAGTTGCCCTTTTATGCACTCAATTTAATCCTTCTCACCGCCCAAAAATGTCGGAAATATTGAGGATGTTGGAAGGTGATGGTTTAGCAGAGAAATGGGAGGCCTCGCAGAAGGTTGAGACTCCAAGGTTCAGGTCATGTGAAAATCCTCCCCAAAGATATTCAGATTACATAGAAGAATCCTCCCTGGTGATTGAAGCAATGGAGCTTTCAGGTCCCAGGTGA 1881 43.65 MESRGYVLWGVGLLLLTLMEGSSATLSPSGINYEVVALMTIKNNLNDPYNVLENWDINSVDPCSWRMVTCSSDGYVSALGLPSQSLSGTLSPWIGNLTNLQSVLLQNNAISGPIPDSIGKLEKLETLDLSHNKFDGGIPSSLGGLKKLNYLRLNNNSLTGPCPESLSQVEGLSLVDLSFNNLSGSMPKISARTFKIIGNPSLCGANATNNCSAISPEPLSFPPDALRAHSDSGSKSHRVAIAFGASFGAALLIIIIVGLSVWWRYRRNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNPKNILGRGGFGIVYKGCLNDRTLVAVKRLKDYNAVGGEIQFQTEVEMISLAVHRNLLRLCGFCTTESERLLVYPYMPNGSVASRLRDQIHGRPALDWSRRKRIALGTARGLLYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRESHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRAANQKGVMLDWVKKLHQEGKLNLMVDKDLKNNFDRVELEEMVKVALLCTQFNPSHRPKMSEILRMLEGDGLAEKWEASQKVETPRFRSCENPPQRYSDYIEESSLVIEAMELSGPR* 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7582198 7588839 - Vvi1g661 Vvi1g661 769861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g661 626 Gene3D Transferase(Phosphotransferase) domain 1 380 596 - -
Vvi1g661 626 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Vvi1g661 626 PANTHER PROTEIN NSP-INTERACTING KINASE 3 6 626 - -
Vvi1g661 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Vvi1g661 626 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Vvi1g661 626 SUPERFAMILY Protein kinase-like (PK-like) 279 577 IPR011009 -
Vvi1g661 626 Pfam Protein kinase domain 305 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g661 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 626 - -
Vvi1g661 626 SMART serkin_6 303 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g661 626 Gene3D Ribonuclease Inhibitor 31 213 IPR032675 -
Vvi1g661 626 SUPERFAMILY L domain-like 32 193 - -
Vvi1g661 626 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Vvi1g661 626 ProSiteProfiles Protein kinase domain profile. 303 586 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76516 PF00069 Pkinase 1.10E-44 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g661 - - vvi:100256748 1217.6