Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g669 ATGTCAACACTGAACCATCTCTTTGATCTTCAAGAACAGATTTGCTATGTACAATGCGGTTTCTGCACCACCATCTTGCTGGTCAGTGTCCCATATAGCAGCTTGTCAATGGTGGTTACAGTCCGATGTGGACATTGCGCAAGCCTCCTCTCTGTAAACATGATGAAAGCCTCATTTGTTCCTCTACATCTCTTAGCTTCTCTTAGCCAGGATGAGCCAAAAGAAGGTTGTCCTAATGAAGAGGGAGCTCAAAAAGCCTCAGACAAGCGAAGTCCATCCATGGTGGCCTCTTCTGACAATGAAGAAGATGATATAGTTCCTGTCCACCATGTCGTTAATAAACCTCCAGAGAAGAGACAGCGAGCTCCATCAGCTTATAACCGCTTCATCAAAGAAGAGATCAGAAGGCTTAAGGCTGAAAACCCCAAGATGACTCACAAGGAAGCCTTCAGTACAGCTGCAAAAAATTGGGCCCACTTCCCAGCAATTCAATTGAAAGGAGCTGGAGAGAGCTGTAGCCAGGAAAGGTAG 531 45.76 MSTLNHLFDLQEQICYVQCGFCTTILLVSVPYSSLSMVVTVRCGHCASLLSVNMMKASFVPLHLLASLSQDEPKEGCPNEEGAQKASDKRSPSMVASSDNEEDDIVPVHHVVNKPPEKRQRAPSAYNRFIKEEIRRLKAENPKMTHKEAFSTAAKNWAHFPAIQLKGAGESCSQER* 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7691530 7692677 + Vvi1g669 Vvi1g669 769869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g669 176 PANTHER AXIAL REGULATOR YABBY 4 1 175 - -
Vvi1g669 176 SUPERFAMILY HMG-box 111 161 IPR036910 -
Vvi1g669 176 MobiDBLite consensus disorder prediction 102 117 - -
Vvi1g669 176 MobiDBLite consensus disorder prediction 71 123 - -
Vvi1g669 176 Pfam YABBY protein 10 165 IPR006780 GO:0007275
Vvi1g669 176 Gene3D High mobility group box domain 112 170 IPR036910 -
Vvi1g669 176 PANTHER PROTEIN YABBY 6-RELATED 1 175 IPR006780 GO:0007275
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14525 PF04690 YABBY 8.10E-65 CL0114 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g669 K25796 - vvi:100258462 353.984