Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g672 ATGTTGGGAGGCAGCAATAGCAATCATATGCTTCCTGTTTTCCTGGGCGAGAGTGGTTTCCAGTGTCACACGAATGCATCAAATCAGTTGCAGTTATTTGGGAATTTACCAGCTGGGTGTGGTGTTGATCCTGTAAATTACTTTGGAAATGAGCTTAACACTTCCATGCTTCAGCCCAACAAACGAGGTAGGGAAGCAGAAGATTTCACAAGGCGGCAAAAACTTCATATTTCTTTGAATGAAGCAGAAGAAATCTCTAGGCGGCAAAAGCATCAAATTTCCTTCAAGTATAACATTTCTCAAGATGAAGCCGACCGATCTGCAAGTTTTCTCAACCAGAATCCTGTGTCAACTGGGCTAAAGCTATCATATGATGATGATGAGCACAATTCCTCAGTTACATCAAGTGGAAGCATGACAGCGGCACCATCAATCATCCTGTCACTTGGTGACAGTATTGGGGCTGAGCTCGACAGACAGAAAGAAGAATTTGATCAGTACATCAAAATTCAGGAAGAACACTTGGTGAAGGGGGTAAGGAACATGAGGCAGAGACACATGACTTCCTTCCTGGCTCCCATAGAGAAAGTTGTCAGAAAGAAGTTACGTGAGAAAGATCTTGAGTTAGAGAACATGAACCGCAAGAATCGGGAATTGGTTGAGAGAATAAAGCAGGCAGCGGTTGAAGCCCAGAATTGGCACTACAAAGCAAAGTACAATGAGTCTGTGGTTAATCTCTTGAAGAACAACCTCCAGCATGCAATTTCACAGGGGGCTGACCAAGGGAAGGAAGGATTTGGAGACAGTGAAGTTGATGATGCTGCTTCTTATATTGACCCACACAATATGGAGCAAATGATTTGCCGAGCATGCAAGAGTAAGGAAGTTTCCATCTTGTTGATTCCTTGTAGGCACCTGTGTATATGTAAGGAATGCGAAGGGTTAATTAGTGTTTGTCCCGTCTGCCAGTCTATGAAAACTACCGGCGTGCAGGTGTACTTGTCCTAA 1008 43.75 MLGGSNSNHMLPVFLGESGFQCHTNASNQLQLFGNLPAGCGVDPVNYFGNELNTSMLQPNKRGREAEDFTRRQKLHISLNEAEEISRRQKHQISFKYNISQDEADRSASFLNQNPVSTGLKLSYDDDEHNSSVTSSGSMTAAPSIILSLGDSIGAELDRQKEEFDQYIKIQEEHLVKGVRNMRQRHMTSFLAPIEKVVRKKLREKDLELENMNRKNRELVERIKQAAVEAQNWHYKAKYNESVVNLLKNNLQHAISQGADQGKEGFGDSEVDDAASYIDPHNMEQMICRACKSKEVSILLIPCRHLCICKECEGLISVCPVCQSMKTTGVQVYLS* 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7707924 7712877 + Vvi1g672 Vvi1g672 769872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g672 335 ProSiteProfiles Zinc finger RING-type profile. 288 323 IPR001841 -
Vvi1g672 335 PIRSF SBP1_RNase_bind 1 335 IPR017066 -
Vvi1g672 335 PANTHER S-RIBONUCLEASE BINDING PROTEIN SBP1-RELATED 4 334 - -
Vvi1g672 335 Pfam Zinc finger, C3HC4 type (RING finger) 285 324 - -
Vvi1g672 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 270 335 IPR013083 -
Vvi1g672 335 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 4 334 IPR017066 -
Vvi1g672 335 Coils Coil 202 229 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g672 K19042 BOI; E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27] - vvi:100248199 664.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g672 Vvi17g762 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g672 . . Bda01g02217 Bda11g01274 Bpe13g00499 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01274 . . . Bma06g00614 . . . . Cma05g00020 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007540 2 1 0 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 0 2 2 36