Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g673 ATGACGCAAAATAGGGACGAACCTCCTGCGGTTCGAGTATATACCATCTGCGACGAATCAAGATATCTGATCGTGAGGAACGTTCCAGCGTTGGGATGTGGCGACGATTTGTTGAATTTATTCGCCTCATATGGAGACATTGAAGAGTGCAAACCAATGGATGCAGAAGACTGTGAGCCTTTCACTGATGTTTATTGGATCAAATTTCGTCTGGTCAGTAATGCCAGATTTGCAAAAAGGAAATTGGACGAATTTGTTTTTCTCGGGAATCGACTGAAGGTTGAATATGCTCCTCATTTTGAGAGCCTTTCTGACACAAAGGAGAAGTTAGAAGGGAGGAGAAAGGAAGTTTTATCACGACTGAACCCTGGAAGATCCAAAATGCCAACAGTTCATAATCCAGATGCTTTGGGTGAGCCTTTATTGGTTAAAAATCCCTCACAGACCAATTGCATTTCAAAGCAGATGAGCTTTAACCAGAGGATATCTGGAGAATCAGATCATGTTTCTCGCATTAAAGATTCTTCAATCACAACAGTTTCCTCTAACCAGGATTATTTCGGGTCCCCATCAATGAATCAGACAGTTCGGTTGGTAAGGGAGAAGCTTGATAAGATACAATCAAGCAGCCAGCACTTAGAAGCTGGGCCTGCATTCAAGAAAACTCGAGTGGACAACAGAAGAAGAATCTAA 693 42.28 MTQNRDEPPAVRVYTICDESRYLIVRNVPALGCGDDLLNLFASYGDIEECKPMDAEDCEPFTDVYWIKFRLVSNARFAKRKLDEFVFLGNRLKVEYAPHFESLSDTKEKLEGRRKEVLSRLNPGRSKMPTVHNPDALGEPLLVKNPSQTNCISKQMSFNQRISGESDHVSRIKDSSITTVSSNQDYFGSPSMNQTVRLVREKLDKIQSSSQHLEAGPAFKKTRVDNRRRI* 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7713303 7718420 - Vvi1g673 Vvi1g673 769873

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g673 230 MobiDBLite consensus disorder prediction 207 230 - -
Vvi1g673 230 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 99 IPR000504 GO:0003723
Vvi1g673 230 PANTHER UNCHARACTERIZED 4 230 IPR039599 -
Vvi1g673 230 SUPERFAMILY RNA-binding domain, RBD 9 101 IPR035979 GO:0003676
Vvi1g673 230 Gene3D - 17 118 IPR012677 -
Vvi1g673 230 CDD RRM_RBM48 11 110 IPR034264 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g673 K24824 RBM48; RNA-binding protein 48 - vvi:100249934 466.077
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g673 . . . Bda11g01273 Bpe13g01470 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda11g01273 . . . Bma06g00615 . . . . Cma05g00019 . Car05g00017 . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006327 1 3 0 1 1 1 1 1 1 2 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 0 3 1 33