Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g677 ATGGTGATTCTGGCAACACTACCAGGTTCTTCTAGCCTCTTCTCCTCTCTCCCTCAAGGCCCTCCTCCAAATGACTCCACCACATCAACACCTCCTCAGCCGCCCATCCCAATTCCCAAATACCCACCACCTCTCAAATCCCAAAAATCCTCAAGACCTCCAACTAAACCCCCCACTCCCGCCTTCAAAACCGTTCATCACCGTTCCAAATATTACAAGCCCGTCTCCGATGGCGTTATCGCATCGGATGGTGACCGCTCCGTCGTCATCGGCGAATCCGGCGTGTCATATCTCCTCCCCGGAGCACCATTCGAGTTCCAGTTCAGTTACTCCGAGACGCCCAAAGCTAAGCCCTTGGCAATCCGGGAGCCGGCATTCTTGCCCTTTGCTCCGCCCACAATGCCAAGGCCGTGGACTGGGAAGGCGCCATTGAAGAAATCCAAGAAGAAGATTCCACTCTTTGATTCCTTTAATCCGCCTCCGCCGGGAACCAAGGGGGTGAAGCGTGTGGAAATGCCAGGGCCGTTTCCGCTTGGGAAGTTTCCCGTGGAAGGGAGGACGAGGGAGGAGATACTCGGAGAGCCATTGAGCAAGGCAGAAATACGGATGCTTGTTAAACCCTATTTGTCTCATAATCGCCAGGTTAATCTCGGAAGGGATGGGCTAACCCATAATATGTTGGAGTTGATACATTCACATTGGAAGCGTCAACGAGTTTGTAAAGTTCGTTGCAAAGGTGTTCCGACAATTGACATGGATAATGTTTGCCATCATCTTGAGGAAAAGACTGGGGGTAAAATCATTCATCGAGTTGGTGGTGTAGTTTATCTTTTTCGTGGCAGAAACTACAATTATCGTACTCGTCCGCAGTACCCAGTGATGCTCTGGAAACCAGCTGCTCCTGTTTATCCAAAACTCATACAAGAAGCCCCAGAAGGATTGACAAAATTTGAAGCTGACGAGTTGCGAATGAAGGGGAAAAATCTTATACCAATCTGTCGATTAGTGAAAAATGGAGTATATATTTCCTTAGTGAAAGATGTGAGGGATGCTTTTGAAGGAAGTCCATTGGTGAAGATTGACTGTAAAGGGATGCATGCAAGTGATTACAAAAAGATAGGTGCCAAGCTTAAGGAATTGGTTCCTTGTGTGCTACTTTCTTTTGATGATGAACAGATATTAACATGGAGGGGACATGGTTGGAAATCAATGTACCAAGGAGCTCCTTCTTTCCTCATTCCTGTTGTTGCTGATGTTGCAAGTGGCTTGGAAGGTTCAGGCATTCCCAAGAGCAACCATCATAGACTGGATACTAAAGCAGTGAGCGCAAGCCCTAAAATGATGTCTCTGTGGAAGAGTGCAATTGAGTCAAGCAAAGCATTGTTGCTGGATGAGACTGGTCTTGGTCCGGATGCTCTTTTGAAGGTAGTAGAGGAATTTGAAGGCATTTCACAGGCCACCGAGCACTCCTATCCAGCTTTAGTGATGTCAAGTGAAGATGGAACTGGTGGTACAAAGGCAGAGTATGAAGGTTATAATAGTGAGGATTATAGTGAAGATGAGATGTACAATGATGATGATGATGATGAATACTTGGTGAATGAGTCATTGGAAGAGATGGAATCACCAGTTCCACTGGGTTCCTTACCTGTTGATCTGTTAGCTAAGCAGCTTGGTGAGGAATGA 1686 46.86 MVILATLPGSSSLFSSLPQGPPPNDSTTSTPPQPPIPIPKYPPPLKSQKSSRPPTKPPTPAFKTVHHRSKYYKPVSDGVIASDGDRSVVIGESGVSYLLPGAPFEFQFSYSETPKAKPLAIREPAFLPFAPPTMPRPWTGKAPLKKSKKKIPLFDSFNPPPPGTKGVKRVEMPGPFPLGKFPVEGRTREEILGEPLSKAEIRMLVKPYLSHNRQVNLGRDGLTHNMLELIHSHWKRQRVCKVRCKGVPTIDMDNVCHHLEEKTGGKIIHRVGGVVYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQEAPEGLTKFEADELRMKGKNLIPICRLVKNGVYISLVKDVRDAFEGSPLVKIDCKGMHASDYKKIGAKLKELVPCVLLSFDDEQILTWRGHGWKSMYQGAPSFLIPVVADVASGLEGSGIPKSNHHRLDTKAVSASPKMMSLWKSAIESSKALLLDETGLGPDALLKVVEEFEGISQATEHSYPALVMSSEDGTGGTKAEYEGYNSEDYSEDEMYNDDDDDEYLVNESLEEMESPVPLGSLPVDLLAKQLGEE* 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7746063 7751765 + Vvi1g677 Vvi1g677 769877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g677 561 MobiDBLite consensus disorder prediction 151 171 - -
Vvi1g677 561 ProSiteProfiles CRM domain profile. 194 290 IPR001890 GO:0003723
Vvi1g677 561 SUPERFAMILY YhbY-like 314 405 IPR035920 -
Vvi1g677 561 PANTHER CRS2-ASSOCIATED FACTOR 2, CHLOROPLASTIC 3 559 - -
Vvi1g677 561 MobiDBLite consensus disorder prediction 1 65 - -
Vvi1g677 561 MobiDBLite consensus disorder prediction 24 60 - -
Vvi1g677 561 MobiDBLite consensus disorder prediction 8 23 - -
Vvi1g677 561 ProSiteProfiles CRM domain profile. 312 408 IPR001890 GO:0003723
Vvi1g677 561 Pfam CRS1 / YhbY (CRM) domain 196 279 IPR001890 GO:0003723
Vvi1g677 561 Pfam CRS1 / YhbY (CRM) domain 314 397 IPR001890 GO:0003723
Vvi1g677 561 Gene3D - 314 408 IPR035920 -
Vvi1g677 561 SUPERFAMILY YhbY-like 195 288 IPR035920 -
Vvi1g677 561 Gene3D - 195 291 IPR035920 -
Vvi1g677 561 PANTHER CRS2-ASSOCIATED FACTOR 1, CHLOROPLASTIC 3 559 IPR044599 GO:0000373
Vvi1g677 561 SMART CRS1_YhbY_2 314 397 IPR001890 GO:0003723
Vvi1g677 561 SMART CRS1_YhbY_2 196 279 IPR001890 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g677 - - - vvi:100253421 1047.73
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g677 . . . . . . Bma14g01799 Bma15g00177 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo11g00919 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008682 0 1 2 2 2 1 1 1 1 1 1 1 1 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 2 35