Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g68 ATGTCTGCAAATATGAGCCTTCGCCTGATTACATATTCCGAAGAGCTTGTAAATGGACAACCAATTTATGTTTCATCAAATTGTCTTCCCTTGAAGGCTTTTAGACTTGAACCAGCGGGGCATGCTTTCCACTCTGCTGCTCTAAGAGTTCTTGGGTGTTGTGAGGAAGAAGGTGAAGATGAGGATGATCAGAATGTGCCCAATGATAAGGAGCAAAGTTATTTTCCATCATCGGGTTCATATAGCAGCAAAGGTAAAAAGAAATCTGGTGCTGAAGGCAAACAACAGGATCATTATGCATTGTTGGGTTTAAGCCATTTAAGATTCCTTGCCACTGAGGACCAGATAAGAAAGAGCTACCGTGAAACTGCTTTGAAGCATCATCCTGACAAACAGGCTGCTCTCATTCTTGCTGAGGAAACTGAAGCTGCAAAGCAAGCGAAGAAAGATGAAATAGAGAACCACTTCAAGTCCATCCAAGAAGCATATGAGGTGTTAATTGATCCTGTGAAGAGAAGAATTTACGACTCTACAGATGAATTTGATGATGAAATTCCAACTGATTGTGAGCCACAAGACTTCTTCAAAGTATTTGGTCCAGCCTTTATGAGGAATAGCAGATGGTCGGTTAACCAACCGGTTCCTACTCTAGGGGAAGAGAATACTCCACTTAAAGAAGTCGATATGTTTTATAATTTTTGGTATTGCTTTAAAAGTTGGAGAGAGTTCCCTCATACAGATGAGTTTGATCTTGAACAAGCTGAGTCTCGCGATCATAAGAGATGGATGGAGAGACAGAATGCAAAACTTTCAGAAAAAGCAAGAAAGGAAGAATATGTACGGATACAGGAGAGACGGCAGAAAGAGGAAGAGGAAAAACGAGCTGCTGAAGCAGCTTCACACCAGAAGAAGGTGAAGGAAAAAGAGAAGAAGCTCTTGCGGAAAGAGCGAACCCGTCTTCGAACTCTATCAGCTCCTGTTTTGACCCAAAATCTGTTCAATATTACTGAAGATGATGTGGAAAGTCTCTGTATGTCACTTGAAACTGAGCAGTTGAGGAATTTATGTGACAAGATCGAGGGAGCAGAAGGGCTTGAACGAGGTAAACTTCTCAGAGATGCACGTGGAGGCAATACTGACTCAACAGAAGAAATTGAGCTCTTGAGAAAAGGGATGCAGAAATATCCCAAAGGAACATCTCGAAGATGGGAGGTTATTTCAGAATACATTGGCACAGGAAGATCCGTTGACGAGATATTGAAGGCAACAAAAACAGTTCTTCTCCAGAAGCCCGATGCCACCAAAGCTTTTGATTCATTCCTTGAGAAGAGAAAGCCGGCTCAGTCCATTGCATCTCCACTTACAACTAGAGAGGAAACAGAGGGAGTACTCATCCAGAATGGGCCTGAAAAGCAAGATTTGTGGTCTGCTGTTCAAGAAAGGGCTCTAGTTCAAGCCCTGAAGACATTTCCAAAGGAAACTAATCAGCGTTGGGAACGAGTTGCTGCTGCAGTTCCTGGGAAAACTGTGAACCAGTGCAAGAAGAAGTTTGCATTGCTGAAGGAGCATTTCAGAAACAAGAAAAATGCTGTTTAG 1596 42.48 MSANMSLRLITYSEELVNGQPIYVSSNCLPLKAFRLEPAGHAFHSAALRVLGCCEEEGEDEDDQNVPNDKEQSYFPSSGSYSSKGKKKSGAEGKQQDHYALLGLSHLRFLATEDQIRKSYRETALKHHPDKQAALILAEETEAAKQAKKDEIENHFKSIQEAYEVLIDPVKRRIYDSTDEFDDEIPTDCEPQDFFKVFGPAFMRNSRWSVNQPVPTLGEENTPLKEVDMFYNFWYCFKSWREFPHTDEFDLEQAESRDHKRWMERQNAKLSEKARKEEYVRIQERRQKEEEEKRAAEAASHQKKVKEKEKKLLRKERTRLRTLSAPVLTQNLFNITEDDVESLCMSLETEQLRNLCDKIEGAEGLERGKLLRDARGGNTDSTEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVDEILKATKTVLLQKPDATKAFDSFLEKRKPAQSIASPLTTREETEGVLIQNGPEKQDLWSAVQERALVQALKTFPKETNQRWERVAAAVPGKTVNQCKKKFALLKEHFRNKKNAV* 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 710555 714160 - Vvi1g68 Vvi1g68 769268

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g68 531 ProSiteProfiles Myb-like domain profile. 467 517 IPR001005 -
Vvi1g68 531 Coils Coil 272 318 - -
Vvi1g68 531 Gene3D - 381 430 - -
Vvi1g68 531 Gene3D - 467 531 - -
Vvi1g68 531 Gene3D DnaJ domain 80 192 IPR036869 -
Vvi1g68 531 SUPERFAMILY Homeodomain-like 473 529 IPR009057 -
Vvi1g68 531 CDD SANT 475 521 IPR001005 -
Vvi1g68 531 CDD DnaJ 97 168 IPR001623 -
Vvi1g68 531 CDD SANT 381 419 IPR001005 -
Vvi1g68 531 ProSiteProfiles dnaJ domain profile. 97 179 IPR001623 -
Vvi1g68 531 SMART sant 376 429 IPR001005 -
Vvi1g68 531 SMART sant 471 523 IPR001005 -
Vvi1g68 531 Pfam DnaJ domain 97 176 IPR001623 -
Vvi1g68 531 Pfam Myb-like DNA-binding domain 475 518 IPR001005 -
Vvi1g68 531 SUPERFAMILY Chaperone J-domain 80 175 IPR036869 -
Vvi1g68 531 SMART dnaj_3 96 171 IPR001623 -
Vvi1g68 531 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 283 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Vvi1g68 531 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 284 373 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Vvi1g68 531 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 382 528 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Vvi1g68 531 ProSitePatterns Nt-dnaJ domain signature. 156 175 IPR018253 -
Vvi1g68 531 MobiDBLite consensus disorder prediction 69 85 - -
Vvi1g68 531 MobiDBLite consensus disorder prediction 58 92 - -
Vvi1g68 531 PRINTS DnaJ domain signature 102 120 IPR001623 -
Vvi1g68 531 PRINTS DnaJ domain signature 120 135 IPR001623 -
Vvi1g68 531 PRINTS DnaJ domain signature 151 171 IPR001623 -
Vvi1g68 531 PANTHER DNAJ DOMAIN, MYB-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 1 283 - -
Vvi1g68 531 PANTHER DNAJ DOMAIN, MYB-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 382 528 - -
Vvi1g68 531 PANTHER DNAJ DOMAIN, MYB-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 284 373 - -
Vvi1g68 531 MobiDBLite consensus disorder prediction 285 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g68 K09522 DNAJC2; DnaJ homolog subfamily C member 2 - vvi:100259545 916.761
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g68 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14526 PF00226 DnaJ 2.30E-18 CL0392 Vvi TF