Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g68 ATGTCTGCAAATATGAGCCTTCGCCTGATTACATATTCCGAAGAGCTTGTAAATGGACAACCAATTTATGTTTCATCAAATTGTCTTCCCTTGAAGGCTTTTAGACTTGAACCAGCGGGGCATGCTTTCCACTCTGCTGCTCTAAGAGTTCTTGGGTGTTGTGAGGAAGAAGGTGAAGATGAGGATGATCAGAATGTGCCCAATGATAAGGAGCAAAGTTATTTTCCATCATCGGGTTCATATAGCAGCAAAGGTAAAAAGAAATCTGGTGCTGAAGGCAAACAACAGGATCATTATGCATTGTTGGGTTTAAGCCATTTAAGATTCCTTGCCACTGAGGACCAGATAAGAAAGAGCTACCGTGAAACTGCTTTGAAGCATCATCCTGACAAACAGGCTGCTCTCATTCTTGCTGAGGAAACTGAAGCTGCAAAGCAAGCGAAGAAAGATGAAATAGAGAACCACTTCAAGTCCATCCAAGAAGCATATGAGGTGTTAATTGATCCTGTGAAGAGAAGAATTTACGACTCTACAGATGAATTTGATGATGAAATTCCAACTGATTGTGAGCCACAAGACTTCTTCAAAGTATTTGGTCCAGCCTTTATGAGGAATAGCAGATGGTCGGTTAACCAACCGGTTCCTACTCTAGGGGAAGAGAATACTCCACTTAAAGAAGTCGATATGTTTTATAATTTTTGGTATTGCTTTAAAAGTTGGAGAGAGTTCCCTCATACAGATGAGTTTGATCTTGAACAAGCTGAGTCTCGCGATCATAAGAGATGGATGGAGAGACAGAATGCAAAACTTTCAGAAAAAGCAAGAAAGGAAGAATATGTACGGATACAGGAGAGACGGCAGAAAGAGGAAGAGGAAAAACGAGCTGCTGAAGCAGCTTCACACCAGAAGAAGGTGAAGGAAAAAGAGAAGAAGCTCTTGCGGAAAGAGCGAACCCGTCTTCGAACTCTATCAGCTCCTGTTTTGACCCAAAATCTGTTCAATATTACTGAAGATGATGTGGAAAGTCTCTGTATGTCACTTGAAACTGAGCAGTTGAGGAATTTATGTGACAAGATCGAGGGAGCAGAAGGGCTTGAACGAGGTAAACTTCTCAGAGATGCACGTGGAGGCAATACTGACTCAACAGAAGAAATTGAGCTCTTGAGAAAAGGGATGCAGAAATATCCCAAAGGAACATCTCGAAGATGGGAGGTTATTTCAGAATACATTGGCACAGGAAGATCCGTTGACGAGATATTGAAGGCAACAAAAACAGTTCTTCTCCAGAAGCCCGATGCCACCAAAGCTTTTGATTCATTCCTTGAGAAGAGAAAGCCGGCTCAGTCCATTGCATCTCCACTTACAACTAGAGAGGAAACAGAGGGAGTACTCATCCAGAATGGGCCTGAAAAGCAAGATTTGTGGTCTGCTGTTCAAGAAAGGGCTCTAGTTCAAGCCCTGAAGACATTTCCAAAGGAAACTAATCAGCGTTGGGAACGAGTTGCTGCTGCAGTTCCTGGGAAAACTGTGAACCAGTGCAAGAAGAAGTTTGCATTGCTGAAGGAGCATTTCAGAAACAAGAAAAATGCTGTTTAG 1596 42.48 MSANMSLRLITYSEELVNGQPIYVSSNCLPLKAFRLEPAGHAFHSAALRVLGCCEEEGEDEDDQNVPNDKEQSYFPSSGSYSSKGKKKSGAEGKQQDHYALLGLSHLRFLATEDQIRKSYRETALKHHPDKQAALILAEETEAAKQAKKDEIENHFKSIQEAYEVLIDPVKRRIYDSTDEFDDEIPTDCEPQDFFKVFGPAFMRNSRWSVNQPVPTLGEENTPLKEVDMFYNFWYCFKSWREFPHTDEFDLEQAESRDHKRWMERQNAKLSEKARKEEYVRIQERRQKEEEEKRAAEAASHQKKVKEKEKKLLRKERTRLRTLSAPVLTQNLFNITEDDVESLCMSLETEQLRNLCDKIEGAEGLERGKLLRDARGGNTDSTEEIELLRKGMQKYPKGTSRRWEVISEYIGTGRSVDEILKATKTVLLQKPDATKAFDSFLEKRKPAQSIASPLTTREETEGVLIQNGPEKQDLWSAVQERALVQALKTFPKETNQRWERVAAAVPGKTVNQCKKKFALLKEHFRNKKNAV* 532
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 710555 714160 - Vvi1g68 Vvi1g68 769268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g68 531 ProSiteProfiles Myb-like domain profile. 467 517 IPR001005 -
Vvi1g68 531 Coils Coil 272 318 - -
Vvi1g68 531 Gene3D - 381 430 - -
Vvi1g68 531 Gene3D - 467 531 - -
Vvi1g68 531 Gene3D DnaJ domain 80 192 IPR036869 -
Vvi1g68 531 SUPERFAMILY Homeodomain-like 473 529 IPR009057 -
Vvi1g68 531 CDD SANT 475 521 IPR001005 -
Vvi1g68 531 CDD DnaJ 97 168 IPR001623 -
Vvi1g68 531 CDD SANT 381 419 IPR001005 -
Vvi1g68 531 ProSiteProfiles dnaJ domain profile. 97 179 IPR001623 -
Vvi1g68 531 SMART sant 376 429 IPR001005 -
Vvi1g68 531 SMART sant 471 523 IPR001005 -
Vvi1g68 531 Pfam DnaJ domain 97 176 IPR001623 -
Vvi1g68 531 Pfam Myb-like DNA-binding domain 475 518 IPR001005 -
Vvi1g68 531 SUPERFAMILY Chaperone J-domain 80 175 IPR036869 -
Vvi1g68 531 SMART dnaj_3 96 171 IPR001623 -
Vvi1g68 531 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 1 283 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Vvi1g68 531 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 284 373 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Vvi1g68 531 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 2 382 528 IPR044634 GO:0006450|GO:0030544|GO:0043022|GO:0051083
Vvi1g68 531 ProSitePatterns Nt-dnaJ domain signature. 156 175 IPR018253 -
Vvi1g68 531 MobiDBLite consensus disorder prediction 69 85 - -
Vvi1g68 531 MobiDBLite consensus disorder prediction 58 92 - -
Vvi1g68 531 PRINTS DnaJ domain signature 102 120 IPR001623 -
Vvi1g68 531 PRINTS DnaJ domain signature 120 135 IPR001623 -
Vvi1g68 531 PRINTS DnaJ domain signature 151 171 IPR001623 -
Vvi1g68 531 PANTHER DNAJ DOMAIN, MYB-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 1 283 - -
Vvi1g68 531 PANTHER DNAJ DOMAIN, MYB-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 382 528 - -
Vvi1g68 531 PANTHER DNAJ DOMAIN, MYB-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED 284 373 - -
Vvi1g68 531 MobiDBLite consensus disorder prediction 285 309 - -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14526 PF00226 DnaJ 2.30E-18 CL0392 Vvi TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g68 K09522 - vvi:100259545 916.761