Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g680 ATGGTGGGTCTTGATGCTGCCGGTAAGACAACCATCCTGTATAAGCTCAAGCTTGGAGAGATCGTGACGACAATTCCTACCATTGGATTCAATGTGGAGACCGTGGAATACAAGAACATTAGCTTCACCGTGTGGGATGTCGGGGGTCAGGATAAGATTCGTCCATTGTGGAGGCACTACTTCCAAAACACTCAGGGTCTTATATTTGTGGTGGATAGCAATGACAGAGATCGAGTTGTCGAGGCCAGGGATGAGTTGCACAGGATGCTGAATGAGGATGAGCTCCGTGAGGCTGTGCTGCTTGTATTTGCTAACAAACAAGATCTCCCTAATGCTATGAATGCTGCCGAGATAACTGATAAGCTTGGCCTCCACTCTCTCCGGCAGCGTCACTGGTACATCCAGAGCACCTGTGCAACCTCTGGTGAAGGGCTTTACGAGGGATTGGATTGGCTCTCCAACAATATTGCTAACAAGGCTTGA 483 48.86 MVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELREAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA* 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7791433 7798899 + Vvi1g680 Vvi1g680 769880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g680 160 PRINTS GTP-binding SAR1 protein signature 26 50 IPR006689 GO:0003924|GO:0005525
Vvi1g680 160 PRINTS GTP-binding SAR1 protein signature 53 78 IPR006689 GO:0003924|GO:0005525
Vvi1g680 160 PRINTS GTP-binding SAR1 protein signature 98 119 IPR006689 GO:0003924|GO:0005525
Vvi1g680 160 ProSiteProfiles small GTPase Arf family profile. 1 156 - -
Vvi1g680 160 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 160 IPR024156 GO:0005525
Vvi1g680 160 Pfam ADP-ribosylation factor family 1 156 IPR006689 GO:0003924|GO:0005525
Vvi1g680 160 PANTHER ADP RIBOSYLATION FACTOR 1 160 - -
Vvi1g680 160 CDD Arf1_5_like 1 155 IPR045872 GO:0003924
Vvi1g680 160 SMART sar_sub_1 1 156 IPR006689 GO:0003924|GO:0005525
Vvi1g680 160 Gene3D - 1 160 IPR027417 -
Vvi1g680 160 SMART arf_sub_2 1 160 - -
Vvi1g680 160 TIGRFAM small_GTP: small GTP-binding protein domain 1 137 IPR005225 GO:0005525
Vvi1g680 160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 158 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g680 K07937 ARF1_2; ADP-ribosylation factor 1/2 - fve:101297087 327.02
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g680 Vvi14g1341 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g680 . Blo16g01160 . Bda11g01269 Bpe13g01466 . . . . Cmo18g00798 . Cma18g00794 . . Sed06g1643 . . Bhi07g01737 Tan04g1244 Cmetu03g0260 . . . . Cla05g02547 . . Cco05g2808 . . Cre05g2705 . . . . Lsi04g00556 Csa05g02332 Chy10g00900 . . . . Bda11g01269 . . . Bma06g00618 . Cmo04g02828 . Cma04g01736 . . . . . . . . . . . . . . . . . . . . . Chy09g00345 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000063 9 18 10 8 7 8 7 10 8 7 8 7 18 10 10 19 7 15 6 8 11 10 12 9 4 7 7 18 10 9 297