Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g688 ATGGATAGCGAAAACGTTGATGGCGTTGCTCACGATTTGGTTTCGCTTCTCACAAGAGAGGATCGGGACTTTCTTGTCCGCAACAATGGCCACCAGGTTAAAGTTGAGAGTTTGAAGGGGAAGAAAATTTGGCTATATTTTTCAGCATCATGGTGTGGGCCATGTCGGCGGTTCACCCCTAAATTAGTTGAGGCCTACAATGAACTCTCCTCCAACGATGATTTTGAAATCATCTTTGTTTCAGGTGATAATGATGATGAGTCGTTCAATGGATATTTCTCCAAGATGCCTTGGCTCGCAATCCCATTTTCTGATTCAGATGCACGAGATCAGTTGAATGAACTGTTCAAGGTGATGGGGATTCCAAACCTTGTGATGCTTGATGAATCTGGCAAGGTTTTGAGCGAAGATGGGGTTGATATCATACAAGAGTATGGAGTGGAAGCTTATCCTTTCACTCCTGAAAAGATCAAAGAAATGAAAGAGAAGGAAGAAACAGCCAGGAAGGAACAATCCTTGAGATCCATCTTAGTCTCTCAGTCCCGTGACTATGTAATTTCAACTGATGGAAAGAAGGTGCCTGTGTCTGAACTAGAAGGGAAGTTCGTTGGGCTGTTTTTCTCATTGTCTTCCTACAAGGCATGCCTTGAATTTACTCCAACGCTAGTGGATGTTTACGAGAAATTAAGGGCAAAGGGGGAGAGCTTTGAAATTGTCATGATATCACTTGATGATGAGGAAGAATCATTCAAAAAATATTTTGGAAGCATGCCTTGGCTTGCATTGCCCTTCAGGGACAAGAGCTGTGAGAAACTAGCTCGCTACTTTGAGCTCTCAGCCCTGCCCACTTTGGTTGTTATTGGGCCAGATGGAAAGACTCTTCACTCCAATGTTGCCGAGGCAATCCAAGAACATGGGATTCAGGCATACCCTTTTACCCCAGAGAAGTTTGCAGAGCTTGAGGAGATTGAGAAGGCAAAACGGGAAGCACAGACACTGGAGTCAATTTTGGTTTCAGGGGACAGAGACTTTGTGATAGGGAAAGATGGAGTCAAGATTCCCGTGTCTGATCTAGTGGGGAAGAACATCCTCCTATATTTCTCAGCACATTGGTGCCCCCCATGCCGTGCTTTTCTACCAAAACTTATTGAAGCATACCAGAAGATTAAGACAAAGGATGAAGCATTCGAAGTGATTTTCATCTCTAGTGACAAGGACCAGACCTCCTTCGATGAATTCTTTTCAGGTATGCCATGGCTGGCACTTCCGTTTGGGGATAAAAGGAAGGCCTCCCTGAGTCGCACGTTCAAGGTCCATGGCATCCCCTCGCTCATAGCCATTGGGCCAACTGGCCGGACTGTCACAACAGAAGCCAGAAATCTTGTTATGATTCATGGGGCTGATGCTTATCCTTTCACTGAAGAACATATAAGGGAGATCGAGGCGCAAAGACAAAGGAAGCAAAGACGATGA 1473 45.01 MDSENVDGVAHDLVSLLTREDRDFLVRNNGHQVKVESLKGKKIWLYFSASWCGPCRRFTPKLVEAYNELSSNDDFEIIFVSGDNDDESFNGYFSKMPWLAIPFSDSDARDQLNELFKVMGIPNLVMLDESGKVLSEDGVDIIQEYGVEAYPFTPEKIKEMKEKEETARKEQSLRSILVSQSRDYVISTDGKKVPVSELEGKFVGLFFSLSSYKACLEFTPTLVDVYEKLRAKGESFEIVMISLDDEEESFKKYFGSMPWLALPFRDKSCEKLARYFELSALPTLVVIGPDGKTLHSNVAEAIQEHGIQAYPFTPEKFAELEEIEKAKREAQTLESILVSGDRDFVIGKDGVKIPVSDLVGKNILLYFSAHWCPPCRAFLPKLIEAYQKIKTKDEAFEVIFISSDKDQTSFDEFFSGMPWLALPFGDKRKASLSRTFKVHGIPSLIAIGPTGRTVTTEARNLVMIHGADAYPFTEEHIREIEAQRQRKQRR* 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7930543 7932916 - Vvi1g688 Vvi1g688 769888

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g688 490 PANTHER NUCLEOREDOXIN 1-2-RELATED 4 485 - -
Vvi1g688 490 CDD TryX_like_TryX_NRX 23 152 IPR045870 GO:0004791
Vvi1g688 490 PANTHER THIOREDOXIN 4 485 - -
Vvi1g688 490 ProSitePatterns Thioredoxin family active site. 364 382 IPR017937 -
Vvi1g688 490 SUPERFAMILY Thioredoxin-like 185 296 IPR036249 -
Vvi1g688 490 CDD TryX_like_TryX_NRX 343 472 IPR045870 GO:0004791
Vvi1g688 490 Gene3D Glutaredoxin 175 313 - -
Vvi1g688 490 Gene3D Glutaredoxin 337 473 - -
Vvi1g688 490 Gene3D Glutaredoxin 16 153 - -
Vvi1g688 490 ProSiteProfiles Thioredoxin domain profile. 322 482 IPR013766 -
Vvi1g688 490 SUPERFAMILY Thioredoxin-like 346 455 IPR036249 -
Vvi1g688 490 Pfam Thioredoxin-like 200 292 IPR012336 -
Vvi1g688 490 Pfam Thioredoxin-like 361 452 IPR012336 -
Vvi1g688 490 Pfam Thioredoxin-like 41 133 IPR012336 -
Vvi1g688 490 SUPERFAMILY Thioredoxin-like 25 134 IPR036249 -
Vvi1g688 490 ProSiteProfiles Thioredoxin domain profile. 1 162 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g688 K17609 NXN; nucleoredoxin [EC:1.8.1.8] - vvi:100852822 959.133
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g688 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001026 1 2 1 1 0 4 3 3 2 3 3 3 3 3 3 3 3 2 2 4 3 3 2 3 3 3 4 3 3 5 81