Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g69 ATGGTGAACGACTTTCAAAAGGGCTCTCTTTCAAGCCGTCTGGGTATTCCAATGATTTATGGTATAGACGCTGTTCATGGCCATAACAGCGTATACAAGGCAACCATATTTCCCCACAATGTGGGTCTTGGGGCTACCAGGGATCCAGAGCTTGTGAAGAGGATTGGCGCTGCGACTGCCCTTGAAGTTAGAGCTACTGGCATTCAATATGCTTTTGCGCCATGTATTGCGGTCTGCAGAGATCCAAGATGGGGCCGGTGCTACGAGAGCTACAGTGAGGATCCCAAAATTGTCAAAGCAATGACAACAATTATAACTGGGCTACAAGGCGAGATCCCCACCAATTCAAGGGCGGGCATGCCTTATGTTGGTGGAAAGAATAAGGTAGCGGCTTGCGCAAAGCACTTTGTGGGTGATGGGGGCACGACTCATGGCATCAATGAGAACAACACCGTTATTGATTGGAAAGGATTAATGAAGATTCACATGCCTGCCTATCACCCTTCCATCGGGAGGGGTGTGGCTACAGTCATGGTTTCCTACTCCAGCTGGAATGGAAAGAAGATGCATGCTAACCACCAACTTATCACTGGATTCCTCAAAAACAACCTTAAATTCAAGGGTTTTGTCATCTCGGATTGGGAGGGTATTGACAGGATCACCTCACCACCCCATGCAAACTACACATATTCCGTTCAAGCTGGGATACAAGCAGGCATTGACATGGTAATGGTTCCTTTTAACCACATTGAATTCATTGGTATTCTGACCAAACTGGTGGAGAGCAAAGTCATCCCCATGAGCCGTATCGATGATGCTGTCAGCAGGATTTTGAGAGTCAAGTTTACCATGGGTTTGTTTGAGAACCCATTGGCTGATCTCAGTTTAGTTGACCAGCTAGGGAGCCAGGCTCATAGAGATTTGGCAAGAGAAGCAGTTAGGAAGTCTATGGTTCTTTTGAAGAATGGAGAAACCGCAGATGCTCCTTTGCTTCCCTTCCCTAAAAAGGCAGACAGGATCCTAGTTGCGGGAACCCACGCCGACAATTTGGGCTACCAATGTGGTGGTTGGACTATCACTTGGCAGGGACTTGATGGAAACAACCACACCCAAGGAACAACCATCCTAAGCGCCATCTCAGCTGCCATTGACCCAAGCACAGAACTGGTATATAGGGAGAATCCTGATGCTGAATTCGTCAAGTCCGGCAACTTCTCCTACGCGATCGTCGTTGTGGGAGAGCACCCTTATGCAGAGACTGCAGGAGATAATTCCAACTTAACAATTCCTGAACCAGGTCCTAGCACAATCACTAACGTATGTGGGGGCATTAAGTGTGTAGTTGTAGTGATCTCAGGCCGGCCTCTGGTGATCCAGCCCTACCTTCCATCCATAAGTGCTCTTGTTGCTGCATGGCTACCAGGCAGTGAAGGCCAAGGTGTGGCTGATGTTCTATTTGGAGACTATGGATTCACCGGGAAGCTTCCTCGGACGTGGTTCAAGACTGTAGAGCAACTGCCTATGAATTTTGACGATGCCTATTATGACCCACTCTTCCCCCTTGGCTTTGGACTCACGACCGAGCCAGCTGCGGCAAGATAG 1602 48.56 MVNDFQKGSLSSRLGIPMIYGIDAVHGHNSVYKATIFPHNVGLGATRDPELVKRIGAATALEVRATGIQYAFAPCIAVCRDPRWGRCYESYSEDPKIVKAMTTIITGLQGEIPTNSRAGMPYVGGKNKVAACAKHFVGDGGTTHGINENNTVIDWKGLMKIHMPAYHPSIGRGVATVMVSYSSWNGKKMHANHQLITGFLKNNLKFKGFVISDWEGIDRITSPPHANYTYSVQAGIQAGIDMVMVPFNHIEFIGILTKLVESKVIPMSRIDDAVSRILRVKFTMGLFENPLADLSLVDQLGSQAHRDLAREAVRKSMVLLKNGETADAPLLPFPKKADRILVAGTHADNLGYQCGGWTITWQGLDGNNHTQGTTILSAISAAIDPSTELVYRENPDAEFVKSGNFSYAIVVVGEHPYAETAGDNSNLTIPEPGPSTITNVCGGIKCVVVVISGRPLVIQPYLPSISALVAAWLPGSEGQGVADVLFGDYGFTGKLPRTWFKTVEQLPMNFDDAYYDPLFPLGFGLTTEPAAAR* 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 715658 718644 - Vvi1g69 Vvi1g69 769269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g69 533 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 317 526 IPR036881 GO:0004553|GO:0005975
Vvi1g69 533 PANTHER BETA-D-GLUCOSIDE GLUCOHYDROLASE 1 530 - -
Vvi1g69 533 Pfam Glycosyl hydrolase family 3 N terminal domain 3 280 IPR001764 GO:0004553|GO:0005975
Vvi1g69 533 SUPERFAMILY (Trans)glycosidases 1 316 IPR017853 -
Vvi1g69 533 Pfam Glycosyl hydrolase family 3 C-terminal domain 317 526 IPR002772 GO:0004553|GO:0005975
Vvi1g69 533 Gene3D - 302 528 IPR036881 GO:0004553|GO:0005975
Vvi1g69 533 Gene3D - 1 301 IPR036962 GO:0004553|GO:0005975
Vvi1g69 533 PRINTS Glycosyl hydrolase family 3 signature 13 29 IPR001764 GO:0004553|GO:0005975
Vvi1g69 533 PRINTS Glycosyl hydrolase family 3 signature 37 56 IPR001764 GO:0004553|GO:0005975
Vvi1g69 533 PRINTS Glycosyl hydrolase family 3 signature 83 99 IPR001764 GO:0004553|GO:0005975
Vvi1g69 533 PRINTS Glycosyl hydrolase family 3 signature 129 145 IPR001764 GO:0004553|GO:0005975
Vvi1g69 533 PRINTS Glycosyl hydrolase family 3 signature 199 217 IPR001764 GO:0004553|GO:0005975
Vvi1g69 533 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 1 530 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g69 K05349 - vvi:100268012 1077.77