Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi1g693 | ATGGCTACTGATAAAATCGATGGCGTTTCTCACGATTTGGTTTTGCTCCTCACTAGTGAGGATCGGGACTTCCTTGTCCGTAATAATGGCCACCAGGTTAAAGTAGAGAGTTTGAAGGGGAAGAAAATTTGGCTATATTTTTCAGCATCATGGTGTGGGCCATGTCGGCAATTCACCCCTAAATTAGTAGAGGTGTACGATGAATTCTCCTCCAAAGGCGATTTTGAAATCATCTTTGTTTCACTTGACAAAGGCGATCAGTTGTTCAATGAATATTTCTCCAAGATGCCCTGGCTTGCAATCCCATTTTCTGATTCGGACACGCGTGATCACTTGAAGAAATTGTTCAAGATGAGGGGGATTCCAAGCCTTGCGATGCTTGATGAATCTGGCAAGGTTTTGAGCAGTGAGGGAGTTGAGATCATAAAAGATTATGGAGTGGAAGGGTATCCTTTCACAGCTGAAAAGATCAAAGAACTGAAGGAAAAGGAAGAAACAGCCAAGAAGGAACAATCCTTGAGATCCATCTTGGTTTCACAATCCCGTGACTATGTTATTTCAGCTGATGGAAGGAAGGTATCCGTGTCTGAATTAGAAGGGAAGTTAGTGGGACTGTATTTCTCATTGTCCTCCTACAACGCATGCCAGGAATTTACTACAACACTGGCGGAAGTTTATGAGGAACTAAGGGCAAAGGGGGAGAGCTTTGAAATAGTCATGATATCGCTTGATGATGAGGAACAATCATTCAAAAAATACTTTGAAAGCATGCCTTGGTTTGCGTTGCCTTTCAATGACAAGAGCTGCGGGAAACTGGCTCGCTACTTTAAGCTCAGAGTCCTACCCACTTTGGTTGTTATTGGGCAAGATGGAAAGACTCTCCATTCCAATGTTGCCGAAGCTATTGAGCAACATGGGATTCAGGCATACCCTTTTACACCAGAGAAGTTTGTGGAGCTCGAGGAGATTGAGAAGGCAAAACGAGAAGCGCAGACGCTTGAGTCAATTTTGGTTTCAGGGGACACAGATTTTGTGATTGGGAAAGATGGAGTCAAGATTCCAGTGTCTCACCTAGCAGGGAAGAACATCCTCCTATATTTCTCAGCACATTGGTGCCCCCCATGCCGCGCTTTCCTACCAAAACTTATAGAAGCATACCAGAATATTAAGGCAAAGGATGAAGCATTCGAAGTGATTTTCATCTCTAGTGACAGGGATCAGGCCTCCTTTGATGAATTCTTTTCAGGTATGCCATGGCTGGCACTTCCCTTTGGGGACAAAAGGAAAGCTTCCTTGGGTCGCACCTTCAAGGTCAGGAGCATCCCCAAGCTCATAGCCGTTGAACCAACGGGCCGGACAGTGACAACAGAAGCCAGAAATCTTGTTATGATTCATGGGGCTGATGCTTATCCCTTCACTGATGAACATATAAAGGAGATCGAAGCGCGATGTAATGGGTGTGAGAAGGAGGGACATTTGTGGTCATTCTATTGTGCAGAATGTGATTTCGACCTCCATCCCAAGTGCGCACTAGACGAAGACAAAGGAATCAAAGATGATAATAAATTGGAGAAAGCAAAACCTGGTGAAGGATGGAAATGTGATGGGGAAGTATGCTCCAGAGCTTGA | 1629 | 44.51 | MATDKIDGVSHDLVLLLTSEDRDFLVRNNGHQVKVESLKGKKIWLYFSASWCGPCRQFTPKLVEVYDEFSSKGDFEIIFVSLDKGDQLFNEYFSKMPWLAIPFSDSDTRDHLKKLFKMRGIPSLAMLDESGKVLSSEGVEIIKDYGVEGYPFTAEKIKELKEKEETAKKEQSLRSILVSQSRDYVISADGRKVSVSELEGKLVGLYFSLSSYNACQEFTTTLAEVYEELRAKGESFEIVMISLDDEEQSFKKYFESMPWFALPFNDKSCGKLARYFKLRVLPTLVVIGQDGKTLHSNVAEAIEQHGIQAYPFTPEKFVELEEIEKAKREAQTLESILVSGDTDFVIGKDGVKIPVSHLAGKNILLYFSAHWCPPCRAFLPKLIEAYQNIKAKDEAFEVIFISSDRDQASFDEFFSGMPWLALPFGDKRKASLGRTFKVRSIPKLIAVEPTGRTVTTEARNLVMIHGADAYPFTDEHIKEIEARCNGCEKEGHLWSFYCAECDFDLHPKCALDEDKGIKDDNKLEKAKPGEGWKCDGEVCSRA* | 543 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 7943321 | 7945676 | - | Vvi1g693 | Vvi1g693 | 769893 |
Annotation
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi1g693 | 542 | Pfam | Thioredoxin-like | 41 | 133 | IPR012336 | - | |
| Vvi1g693 | 542 | Pfam | Thioredoxin-like | 200 | 292 | IPR012336 | - | |
| Vvi1g693 | 542 | Pfam | Thioredoxin-like | 361 | 452 | IPR012336 | - | |
| Vvi1g693 | 542 | SUPERFAMILY | Thioredoxin-like | 185 | 296 | IPR036249 | - | |
| Vvi1g693 | 542 | CDD | TryX_like_TryX_NRX | 23 | 152 | IPR045870 | GO:0004791 | |
| Vvi1g693 | 542 | Pfam | C1 domain | 477 | 510 | IPR004146 | - | |
| Vvi1g693 | 542 | ProSiteProfiles | Thioredoxin domain profile. | 13 | 162 | IPR013766 | - | |
| Vvi1g693 | 542 | PANTHER | THIOREDOXIN | 2 | 483 | - | - | |
| Vvi1g693 | 542 | PANTHER | THIOREDOXIN | 483 | 511 | - | - | |
| Vvi1g693 | 542 | ProSitePatterns | Thioredoxin family active site. | 364 | 382 | IPR017937 | - | |
| Vvi1g693 | 542 | Gene3D | Glutaredoxin | 336 | 473 | - | - | |
| Vvi1g693 | 542 | Gene3D | Glutaredoxin | 175 | 313 | - | - | |
| Vvi1g693 | 542 | Gene3D | Glutaredoxin | 16 | 154 | - | - | |
| Vvi1g693 | 542 | PANTHER | NUCLEOREDOXIN 1-2-RELATED | 483 | 511 | - | - | |
| Vvi1g693 | 542 | PANTHER | NUCLEOREDOXIN 1-2-RELATED | 2 | 483 | - | - | |
| Vvi1g693 | 542 | CDD | TryX_like_TryX_NRX | 343 | 472 | IPR045870 | GO:0004791 | |
| Vvi1g693 | 542 | SUPERFAMILY | Cysteine-rich domain | 478 | 511 | IPR046349 | - | |
| Vvi1g693 | 542 | ProSiteProfiles | Thioredoxin domain profile. | 322 | 482 | IPR013766 | - | |
| Vvi1g693 | 542 | SUPERFAMILY | Thioredoxin-like | 25 | 134 | IPR036249 | - | |
| Vvi1g693 | 542 | SUPERFAMILY | Thioredoxin-like | 346 | 455 | IPR036249 | - |
Pathway
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi1g693 | K17609 | NXN; nucleoredoxin [EC:1.8.1.8] | - | vvi:100852797 | 1068.53 |
Deco-Alignment
| Select | Vvi1 | Blo1 | Blo2 | Bda1 | Bda2 | Bpe1 | Bpe2 | Bma1 | Bma2 | Cmo1 | Cmo2 | Cma1 | Cma2 | Car1 | Car2 | Sed1 | Cpe1 | Cpe2 | Bhi1 | Tan1 | Cmetu1 | Lac1 | Hepe1 | Mch1 | Lcy1 | Cla1 | Cam1 | Cec1 | Cco1 | Clacu1 | Cmu1 | Cre1 | Cone1 | Cone2 | Cone3 | Cone4 | Lsi1 | Csa1 | Chy1 | Cme1 | Blo3 | Blo4 | Bda3 | Bda4 | Bpe3 | Bpe4 | Bma3 | Bma4 | Sed2 | Cmo3 | Cmo4 | Cma3 | Cma4 | Car3 | Car4 | Cpe3 | Cpe4 | Bhi2 | Tan2 | Cmetu2 | Lac2 | Hepe2 | Mch2 | Lcy2 | Cla2 | Cam2 | Cec2 | Cco2 | Clacu2 | Cmu2 | Cre2 | Lsi2 | Csa2 | Chy2 | Cme2 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Vvi1g693 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | Cone19ag1033 | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . | . |
Syn-Orthogroups
| Select | Orthogroup | Bda | Bhi | Blo | Bma | Bpe | Cam | Car | Cco | Cec | Chy | Cla | Clacu | Cma | Cme | Cmetu | Cmo | Cmu | Cone | Cpe | Cre | Csa | HCH | Hepe | Lac | Lcy | Lsi | Mch | Sed | Tan | Vvi | Total |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OG0001026 | 1 | 2 | 1 | 1 | 0 | 4 | 3 | 3 | 2 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 2 | 2 | 4 | 3 | 3 | 2 | 3 | 3 | 3 | 4 | 3 | 3 | 5 | 81 |