Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g694 ATGGGGATTCAACCTTTCCTCTTCTCTGTCTTTTTGCTTCTCCTACATTCTACAGGTTGGGCGTTGGTTCAACGCACAGGACATCAACTTTTCTTAATCACCAAGCAAATTATGATAAAAGTGGGGATATCAACTTCACACTCCACTCCCACTTATAAATACGATTCCTCTGTTCCCACGGAACCCCAATTCCTCGATTTTATCTTCCACAGCTACTCTGATTGTAATCGCAATATGGACTGTGAGGATGGGTCTGCAGTTCATGATGTCGTTTCCGTCCTCTCTTCCCCCAACAGGGACTACCTTATACGCAACAATGGCAATCAGGTTAAGATTACCAGTTTGAGGGGAAAGAAGATTGGGTTATATTTTTCAGCATCATGGTGTGGCCCATGTCGACGATTCACCCCAGAGTTAGTAGAGGTGTACAATGGCCTCTCCTTGAAAGGTGATTTTGAGATCACCTTTGTTTCAGCTGACGAGGATGATGAGATGTTCAAGGAGTATTTCTCTGAGATGCCATGGCTTGCAATACCATTTTCTGATTCAGATACACGCGATCATTTGGATGAACTATTTAGGGTGAGTGGTATTCCACACCTTGTGATCATTGGTGAAAATGGGAAGGTTTTGACTGATAGTGGGGTTGAGATTATACGAGAGTATGGAGTGGAAGGTTTTCCTTTTACTTCAGAGAGGATTAAAGAATTAAAAGAGCAGGAGGAAGTGGCCAAGAGGGAACAGTCCTTGAGATCCATCTTAGTCTCCGACTCACGTGATTTCGTAATTTCAGCCAATGGAATGAAAGTACCTATCTCTAAGCTTGAAGGGAGGTTGGTGGGGCTTTATTTCTCATTATCTTCGTACAAATTATGTGTTGATTTTACTTCAAAACTAGTGGATGTTTATGCTAAGGTGAAAGCAATGGGGGAGAGCTTTGAAATTGTCTTGATATCATTTGATGATGATGAAGAATCATTCAATGAAGGATTTGGAAGCATGCCTTGTTTTGCATTGCCCTTCAAGGATGAGAGCTGTAGGAAGCTGGCTAGGTACTTTGAACTCTCGACAGTACCCACTTTGGTTATGATTGGGCCAGATGGAAAAACACTCCATTCCAATGTTGTAGAAGCCATTGAAGAGTATGGGATTCAGGCATACCCTTTTACCCCTGCAAAGTTTGCAGAGCTTGAGGAGATAGAGAAGGCAAAACAGGAAGCACAGACTCTAGAGTCAATTTTGGTTTCAGGGAATCGAGATTATTTGATTGGGAAACATGGGGTCAAGGTTCCAGTGTCTGATCTTGTGGGTAAGAACATCCTCCTATATTTCTCAGCACATTGGTGCTCTCCATGCCGTGCTTTTCTGCCAAAACTTACTGACGCATATCACAAGATTAAGGCCAAGGACAGTGGTTTTGAAGTGATTTTCATCTCTAGCGATAGGGACCAGACCTCCTTTGATGATTTCTTTTCTGAAATGCCATGGCTGGCACTTCCCTTTGGCGATGAGAGGAAGGAATCTTTAAGCAAGATGTTCAAGGTCCAGGGCATCCCCAAGGTTGTGGCCATTGGACCAACTGGCCGGACTATTACAACACAAGCCAGAGACCTTGTAGCCGATCATGGGGCCGATGCCTATCCTTTCACTGATGAACGTTTACAGGAGATAGAGGCACAATATGAGATGGCAAAGGGTGTGCTTTGGAAGACGGCAAAGGAACTGAAGATGATGCAATGGATGAGGAAAAACCAGAAGAAGGATGGATATGCGACGGGAAAGTCTGTTTCAAAGCTTGAGAGAAAAATAAGGGAAGGGTGCAGTCGTCAACAACTTTACGGGCTAATCATGTAA 1854 43.58 MGIQPFLFSVFLLLLHSTGWALVQRTGHQLFLITKQIMIKVGISTSHSTPTYKYDSSVPTEPQFLDFIFHSYSDCNRNMDCEDGSAVHDVVSVLSSPNRDYLIRNNGNQVKITSLRGKKIGLYFSASWCGPCRRFTPELVEVYNGLSLKGDFEITFVSADEDDEMFKEYFSEMPWLAIPFSDSDTRDHLDELFRVSGIPHLVIIGENGKVLTDSGVEIIREYGVEGFPFTSERIKELKEQEEVAKREQSLRSILVSDSRDFVISANGMKVPISKLEGRLVGLYFSLSSYKLCVDFTSKLVDVYAKVKAMGESFEIVLISFDDDEESFNEGFGSMPCFALPFKDESCRKLARYFELSTVPTLVMIGPDGKTLHSNVVEAIEEYGIQAYPFTPAKFAELEEIEKAKQEAQTLESILVSGNRDYLIGKHGVKVPVSDLVGKNILLYFSAHWCSPCRAFLPKLTDAYHKIKAKDSGFEVIFISSDRDQTSFDDFFSEMPWLALPFGDERKESLSKMFKVQGIPKVVAIGPTGRTITTQARDLVADHGADAYPFTDERLQEIEAQYEMAKGVLWKTAKELKMMQWMRKNQKKDGYATGKSVSKLERKIREGCSRQQLYGLIM* 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7946356 7960766 - Vvi1g694 Vvi1g694 769894

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g694 617 CDD TryX_like_TryX_NRX 100 229 IPR045870 GO:0004791
Vvi1g694 617 ProSiteProfiles Thioredoxin domain profile. 85 239 IPR013766 -
Vvi1g694 617 Gene3D Glutaredoxin 93 231 - -
Vvi1g694 617 Gene3D Glutaredoxin 253 390 - -
Vvi1g694 617 Gene3D Glutaredoxin 395 551 - -
Vvi1g694 617 PANTHER THIOREDOXIN 83 584 - -
Vvi1g694 617 CDD TryX_like_TryX_NRX 420 549 IPR045870 GO:0004791
Vvi1g694 617 PANTHER NUCLEOREDOXIN 1-2-RELATED 83 584 - -
Vvi1g694 617 ProSiteProfiles Thioredoxin domain profile. 399 559 IPR013766 -
Vvi1g694 617 SUPERFAMILY Thioredoxin-like 102 211 IPR036249 -
Vvi1g694 617 SUPERFAMILY Thioredoxin-like 422 534 IPR036249 -
Vvi1g694 617 Coils Coil 400 420 - -
Vvi1g694 617 Pfam Thioredoxin-like 277 369 IPR012336 -
Vvi1g694 617 Pfam Thioredoxin-like 117 210 IPR012336 -
Vvi1g694 617 Pfam Thioredoxin-like 438 529 IPR012336 -
Vvi1g694 617 SUPERFAMILY Thioredoxin-like 263 372 IPR036249 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g694 K17609 NXN; nucleoredoxin [EC:1.8.1.8] - vvi:109122684 978.008
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g694 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001026 1 2 1 1 0 4 3 3 2 3 3 3 3 3 3 3 3 2 2 4 3 3 2 3 3 3 4 3 3 5 81