Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g698 ATGGACAGGGCTTCAATTCTTGGAGATGCGATCCAGTATATTGTGGAGTTGCAGCAGGAGGTGAAGAAACTCCAGGATGAGGTCAATATGGAACAAGAGGACTGCAATATGAAGGATGCTGAATTGAAAAGAAGCTCTAGATACTCACCAGCTACTACTGAACACAACCGAGGCAGCTCTAGTATCCGCGAAAAGAAACAAATAGAATCACAAAGAGTGCAAGTAGAAGTGAAGCTGATTGGCACAAGAGAATTTTTGCTGAAGTTGTTATGTGAGCAGAAGCGAGGTGGGTTTGCAAGGCTGATGGAGGCTATCAACGTTTTAGGGCTTCAAGTTGTTGATGCCAACATCACCACATTTAATGGCAACGTCTTGAACATTTTCAGGGTTGAGGCTAGAGAAATCAGAATGTACATAGAAATACATTGGGATGAGAAGAAAAAGAGAGCAAGTTGTGATTCAGAAAATGAAGCATTTACTCTCAGCATTGAGAGCTCTCCTGTTCATGTATCTTCACTTCATCTTGTATGA 531 41.81 MDRASILGDAIQYIVELQQEVKKLQDEVNMEQEDCNMKDAELKRSSRYSPATTEHNRGSSSIREKKQIESQRVQVEVKLIGTREFLLKLLCEQKRGGFARLMEAINVLGLQVVDANITTFNGNVLNIFRVEAREIRMYIEIHWDEKKKRASCDSENEAFTLSIESSPVHVSSLHLV* 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7989002 7990113 + Vvi1g698 Vvi1g698 769898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g698 176 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 148 - -
Vvi1g698 176 Coils Coil 7 41 - -
Vvi1g698 176 MobiDBLite consensus disorder prediction 35 65 - -
Vvi1g698 176 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 35 IPR036638 GO:0046983
Vvi1g698 176 MobiDBLite consensus disorder prediction 35 50 - -
Vvi1g698 176 PANTHER TRANSCRIPTION FACTOR BHLH90 1 148 - -
Vvi1g698 176 Gene3D - 1 42 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g698 - - - vvi:100853983 321.242
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g698 . . . . . . . . . . . . . . Sed04g0627 . Cpe01g01533 Bhi07g01732 Tan04g1237 Cmetu10g1279 . . . . Cla05g02543 Cam05g2733 Cec05g2764 Cco05g2804 Clacu05g2734 Cmu05g2587 Cre05g2701 . . . . Lsi04g00551 . Chy10g00903 . . . Bda07g01603 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015059 1 0 0 1 1 1 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 1 0 1 1 1 0 0 0 1 11