Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g699 ATGTCACTGGGCCCATCGCCGGTCCTGCAGGAGCTTTGCAATGTTGTTTCAAATGGAGTCGGCAGTTTAGATGATTTGGAAGCAAGTCTTGATCGGCTTGATGCTTCTTTCACGTCATCTCTCATTAGCCAGATTCTTGACACTTGCAAAAACGAGGCACCCACTAGAAGGCTTCTTAGGTTCTTCTTGTGGTCTTCTAAGAAGTTCAATTGTAAATTGGAAGATGATGATTTTAATTATGCAATTCAGGTGTTTGCGGAGAAGAAAGACCTCAAGGCAATTGATATTTTGGTTTCAGATCTCAGTAATGAGGGTAGAGAGATGAAGGCTCAGACTTTTGGTATTGTAGCTGAGACATTGGTCAGTCTGGGGAGAGAAGATGATGCTTTGGGTCTTTTCAAGAACCTGGACAAATTCAAGTGTTCCTATGATAGCGTTACAGTTACTGCAATTGTTAATGCCCTTTGCTCTAAAGGTCATGCCAGAAGAGCAGAAGGAGTTGTGAGACACCATAAGGATAAGATTTTGGGGGTAAAGCCTTGCATTTATAGGAGTCTTTTCTACGGATGGTCTGAGCAGAAGAATGTGAAAGAAGCACGAAGAATTCTCAAAGAGATGAAGTCAGTTGGAATTATGCCAGATTTATTTTGCTATAACACATTCCTTAGATGCCTTTGTGAGCGAAATCTTAAATCTAATCCTTCAGGTCTTGTACCCGAAGCATTAAATGTGATGATGGAGATGAGATCCAATAGGATAACCCCAACCTCAATTAGTTACAACATATTGCTCTCCTGTTTAGGTAGGACTAGAAGAGTTAAGGAATCCTGTCGAATACTTGACTTGATGAAGAGGTTGGGTTGTTCTCCTGATTGGGTCAGCTATTATCTTGTTGCAAGAGTACTATATTTGACAGGGAGATTTGGGAAAGGTAACCAGATAGTAGATGAAATGATTGAAGAGGGATTGGTTCCGGATCGGAAGTTTTATTATGATTTAATTGGTGTTCTCTGTGGGGTTGAGAGGGTGAATTATGCTCTTGAGATGTTCGAGCGAATGAAGAGAAGCTCATTGGGTGGTTATGGACCAGTATATGATGTGCTTATTCCGAAGCTTTGTAGATCAGGTGACTTTGGAAAAGGTAGGGAGCTTTGGGATGAGGCAACCAGGGTGGGTGTTCTGCTGCATTGCTCGAGTGAAGTGTTGGACCCTTCAATCACTAAGGTGTTTAAGCCAGCAAGGAAGGATGAGGAAGTCTGCACCATGTCCAGAACTCTTGTGCAAGAAGCGAAAGCTGTCAGAAATGGAAATAAGAATAAGAAGAATAAAAACAAAAAGAAAAGTGCTGCACCATCTTAA 1359 41.57 MSLGPSPVLQELCNVVSNGVGSLDDLEASLDRLDASFTSSLISQILDTCKNEAPTRRLLRFFLWSSKKFNCKLEDDDFNYAIQVFAEKKDLKAIDILVSDLSNEGREMKAQTFGIVAETLVSLGREDDALGLFKNLDKFKCSYDSVTVTAIVNALCSKGHARRAEGVVRHHKDKILGVKPCIYRSLFYGWSEQKNVKEARRILKEMKSVGIMPDLFCYNTFLRCLCERNLKSNPSGLVPEALNVMMEMRSNRITPTSISYNILLSCLGRTRRVKESCRILDLMKRLGCSPDWVSYYLVARVLYLTGRFGKGNQIVDEMIEEGLVPDRKFYYDLIGVLCGVERVNYALEMFERMKRSSLGGYGPVYDVLIPKLCRSGDFGKGRELWDEATRVGVLLHCSSEVLDPSITKVFKPARKDEEVCTMSRTLVQEAKAVRNGNKNKKNKNKKKSAAPS* 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 7999868 8002071 - Vvi1g699 Vvi1g699 769899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g699 452 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 7 445 - -
Vvi1g699 452 Pfam PPR repeat family 255 295 IPR002885 -
Vvi1g699 452 TIGRFAM PPR: pentatricopeptide repeat domain 258 292 IPR002885 -
Vvi1g699 452 TIGRFAM PPR: pentatricopeptide repeat domain 182 214 IPR002885 -
Vvi1g699 452 Gene3D Tetratricopeptide repeat domain 20 174 IPR011990 GO:0005515
Vvi1g699 452 MobiDBLite consensus disorder prediction 431 452 - -
Vvi1g699 452 Pfam Pentatricopeptide repeat domain 183 224 IPR002885 -
Vvi1g699 452 Gene3D Tetratricopeptide repeat domain 189 361 IPR011990 GO:0005515
Vvi1g699 452 Pfam PPR repeat 333 356 IPR002885 -
Vvi1g699 452 MobiDBLite consensus disorder prediction 437 452 - -
Vvi1g699 452 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 7 445 - -
Vvi1g699 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Vvi1g699 452 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 179 213 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g699 - - - vvi:100853947 875.93
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g699 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010499 1 1 1 0 0 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 5 1 1 31