Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g7 ATGATACTACTAGGGACTACACTTAAAAGAAGGGGAATTCTGAACCACACGGGAGAAGCAATATTCAGGCGGGCCTGGAACTTGTTAGCGGGGGAGGCACACTCAGTAGGTCTTACTGTGAAGGGGGATCAAGAAAATGCTATTCTGAGTCCACTAGTGGAGCCATCAACAGCAGAAGTGGCCGGTAGAATTGAGTGTATCTCTACATCATCAGAAGATGAGGATGTCTGTCCCACATGCCTTGAAGATTACACTCCTGAAAATCCTAAGATAGTTACACAATGTTCTCATCATTTCCACCTTGGTTGTATATATGAGTGGTTGGAGAGAAGCCAAACCTGTCCAGTTTGTAGTAAGGTAACTAGTTTCTATTATACATCTTCTGATTTCATTCTAAATATTATACTTTTTCAGTTGGTATCTTAG 426 41.55 MILLGTTLKRRGILNHTGEAIFRRAWNLLAGEAHSVGLTVKGDQENAILSPLVEPSTAEVAGRIECISTSSEDEDVCPTCLEDYTPENPKIVTQCSHHFHLGCIYEWLERSQTCPVCSKVTSFYYTSSDFILNIILFQLVS* 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 112284 118695 + Vvi1g7 Vvi1g7 769207

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g7 141 Pfam Ring finger domain 76 117 IPR001841 -
Vvi1g7 141 SUPERFAMILY RING/U-box 71 124 - -
Vvi1g7 141 SMART ring_2 77 117 IPR001841 -
Vvi1g7 141 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 56 123 - -
Vvi1g7 141 ProSiteProfiles Zinc finger RING-type profile. 77 118 IPR001841 -
Vvi1g7 141 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 56 123 - -
Vvi1g7 141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 130 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g7 - - - sspl:121809328 121.709
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g7 Vvi14g991 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g7 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme09g00694
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0069258 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1