Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g7 ATGATACTACTAGGGACTACACTTAAAAGAAGGGGAATTCTGAACCACACGGGAGAAGCAATATTCAGGCGGGCCTGGAACTTGTTAGCGGGGGAGGCACACTCAGTAGGTCTTACTGTGAAGGGGGATCAAGAAAATGCTATTCTGAGTCCACTAGTGGAGCCATCAACAGCAGAAGTGGCCGGTAGAATTGAGTGTATCTCTACATCATCAGAAGATGAGGATGTCTGTCCCACATGCCTTGAAGATTACACTCCTGAAAATCCTAAGATAGTTACACAATGTTCTCATCATTTCCACCTTGGTTGTATATATGAGTGGTTGGAGAGAAGCCAAACCTGTCCAGTTTGTAGTAAGGTAACTAGTTTCTATTATACATCTTCTGATTTCATTCTAAATATTATACTTTTTCAGTTGGTATCTTAG 426 41.55 MILLGTTLKRRGILNHTGEAIFRRAWNLLAGEAHSVGLTVKGDQENAILSPLVEPSTAEVAGRIECISTSSEDEDVCPTCLEDYTPENPKIVTQCSHHFHLGCIYEWLERSQTCPVCSKVTSFYYTSSDFILNIILFQLVS* 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 112284 118695 + Vvi1g7 Vvi1g7 769207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g7 141 Pfam Ring finger domain 76 117 IPR001841 -
Vvi1g7 141 SUPERFAMILY RING/U-box 71 124 - -
Vvi1g7 141 SMART ring_2 77 117 IPR001841 -
Vvi1g7 141 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 56 123 - -
Vvi1g7 141 ProSiteProfiles Zinc finger RING-type profile. 77 118 IPR001841 -
Vvi1g7 141 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 56 123 - -
Vvi1g7 141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 130 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Vvi1g7 Vvi14g991 ECH
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g7 - - sspl:121809328 121.709