Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g700 ATGTCGGACTCGGCGGAGTCGCCAGGTTCTTTACCTGAGTCTCCTCCGGAGGACTCCTCGTCTCCTCCACCAAAATCATCAACCTCACCACCTCCTCCACCTGATGATGATTCTCCTTCGGCACCTCCACCTACATCCAAAACTTCACCCCCTCCACCCTCCGATTCATCCCCACCACCTGATTCAAACACATCACCGCCCTCACCACCCCCTCCCAAATCCGAGTCACCGCCTCCTACTCCGCCACCACCTTCACCTTCACCTCCACCTCCACCTCCACCTCCACCGTCCTCCGGTTCAGGCCCTCCCAAACCTCCACCACCATCACATTCAAACTCTTCACCCCCACCACCACCAACATCGCCACCACCTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCACTTCACATGTCCCCCCTCCTCCACCATCAGATCGGGTTCCAAGTTCATCCACTCCTTCCCCAACATCCAGTCCAGAGAAATCTAGCCAATCATCGGGATCGGGATCGGGATCAAGTACGAGTTCTCAGACTGGCCCTGTTGTCGGTGTGACAGTAGCTGGAGTGGTCATCCTTGCACTGGTTGCCATCTTTTTTGTGGTCTCTCGACGGAAGAAGAAGCATTCAGGGGTCATTCCAGCAAAATACAATCCACCAACTGCAAGCTACTCTGTGAAATCAAATGGGCATTACTATGGACAGCAACCTATGGGGATGTCAGCTCCTTATGGTTCACAACACTCACTTTCTCAACATGGAAATGGAAACAACTATGGGAGTCAAAGAGGGCAAATGTACTACCCTGGGGGACCAGAATCAGGTGTCATAGGCGGTGCTAAGTCCTTTTTCACCTATGAAGAGTTGATGGAAATAACCAATGGATTTTCTCGTCAAAATATCATTGGTGAGGGTGGGTTTGGATATGTTTACAAAGGTTGGCTGCCAGATGGGAGAGTGGTGGCCGTTAAGCAGCTCAAGGCAGGCAGTGGACAGGGCGAACGGGAGTTCAGAGCTGAAGTTGAGATTATTAGTCGTGTTCATCATCGGCATTTGGTCTCTTTGGTGGGATATTCTATAGCTGAGAATCAAAGATTACTCCTCTATGAATTCCTTCCAAACAAGACTCTTGAACATCATTTGCATGGTAAAGAGTTGCCTGTATTGGACTGGACCAAAAGACTCAAGATTGCCATAGGATCTGCTCGTGGTTTGGCATATCTACATGAAGACTGTAATCCAAAAATTATTCATAGGGACATCAAGTCAGCAAACATTCTGTTGGATGATGATTTTGAAGCGCAGGTTGCAGACTTTGGGCTTGCCAAACCATCAAATGACAATAATACCCATGTATCAACTCGAGTCATGGGAACTTTTGGGTACATGGCACCAGAGTATGCATCAAGTGGGAAATTGACTGATAGATCTGATGTATTCTCATTCGGGGTGGTACTTTTAGAGCTTATAACAGGGCGTAAACCTGTTGATCCAACTCAACCTTTGGGAGATGAGAGTTTGGTTGAATGGGCTCGCCCGCTCCTCATTCATGCTCTTGAAACTGGTGATGTCAGTGAATTAATAGATCCAAGGCTGGAACACAGGTACGTGGAGAGCGAGATGCTTAGAATGATTGAGACAGCTGCTGCCTGTGTTCGTCATTCTGCTCCAAAGCGGCCCCGCATGGCAAAGGTGGTAAGAGCATTAGACAGTGAAGGCGAATCGACTGATCTCACCAATGGAGTGAAATATGGTCAGAGCACCATTTATGATTCTGGGCAGTACAATCAGGACATTCAAAGATTTAGGAGGATGGCACTTGGTGATGACAGCTCAGAATATGACATGTACAGTGGGGAATACCAATCGAAAGAAGTGTCTCTTGGAGCCCCAACTTCAAGTACCTTAACTGAGTCAGAAACCCAAGCCATGAATGGCAAATAG 2019 45.96 MSDSAESPGSLPESPPEDSSSPPPKSSTSPPPPPDDDSPSAPPPTSKTSPPPPSDSSPPPDSNTSPPSPPPPKSESPPPTPPPPSPSPPPPPPPPPSSGSGPPKPPPPSHSNSSPPPPPTSPPPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTSHVPPPPPSDRVPSSSTPSPTSSPEKSSQSSGSGSGSSTSSQTGPVVGVTVAGVVILALVAIFFVVSRRKKKHSGVIPAKYNPPTASYSVKSNGHYYGQQPMGMSAPYGSQHSLSQHGNGNNYGSQRGQMYYPGGPESGVIGGAKSFFTYEELMEITNGFSRQNIIGEGGFGYVYKGWLPDGRVVAVKQLKAGSGQGEREFRAEVEIISRVHHRHLVSLVGYSIAENQRLLLYEFLPNKTLEHHLHGKELPVLDWTKRLKIAIGSARGLAYLHEDCNPKIIHRDIKSANILLDDDFEAQVADFGLAKPSNDNNTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPTQPLGDESLVEWARPLLIHALETGDVSELIDPRLEHRYVESEMLRMIETAAACVRHSAPKRPRMAKVVRALDSEGESTDLTNGVKYGQSTIYDSGQYNQDIQRFRRMALGDDSSEYDMYSGEYQSKEVSLGAPTSSTLTESETQAMNGK* 673
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8004149 8007646 - Vvi1g700 Vvi1g700 769900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g700 672 MobiDBLite consensus disorder prediction 650 672 - -
Vvi1g700 672 CDD STKc_IRAK 327 595 - -
Vvi1g700 672 MobiDBLite consensus disorder prediction 262 289 - -
Vvi1g700 672 MobiDBLite consensus disorder prediction 637 672 - -
Vvi1g700 672 Gene3D Transferase(Phosphotransferase) domain 1 397 612 - -
Vvi1g700 672 MobiDBLite consensus disorder prediction 262 290 - -
Vvi1g700 672 MobiDBLite consensus disorder prediction 1 206 - -
Vvi1g700 672 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 23 656 - -
Vvi1g700 672 MobiDBLite consensus disorder prediction 176 206 - -
Vvi1g700 672 ProSiteProfiles Protein kinase domain profile. 321 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g700 672 Gene3D Phosphorylase Kinase; domain 1 298 396 - -
Vvi1g700 672 Pfam Protein tyrosine and serine/threonine kinase 324 594 IPR001245 GO:0004672|GO:0006468
Vvi1g700 672 SMART serkin_6 321 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g700 672 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 23 656 - -
Vvi1g700 672 SUPERFAMILY Protein kinase-like (PK-like) 304 594 IPR011009 -
Vvi1g700 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 441 453 IPR008271 GO:0004672|GO:0006468
Vvi1g700 672 MobiDBLite consensus disorder prediction 15 125 - -
Vvi1g700 672 ProSitePatterns Protein kinases ATP-binding region signature. 327 349 IPR017441 GO:0005524
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76517 PF07714 PK_Tyr_Ser-Thr 1.90E-44 CL0016 Vvi PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g700 - - vvi:100853911 927.546