Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g701 ATGGGACCGATCGGGAAGGGTACGGATGTTGTGTCTATACACAAGAATTCGCATTCTACTTTAACCGGCCAAGCGCGATTTGAATCGTTTCGAATATTTTCGCAGGCGGTGGGGAAAAAGTGCGGTGGTGATGCTAATATCAACTATGCCTGGTATGGCGCCTCCAGGGGTGAAATCTATGATATTATATCTCATGGATTTAGCCGACTTCAACGGCCAAAAGCTGGTGAACTATATGGTTTTGGGGTATATCTATCTTCTGCAAAGTTTTCCATTGATTGTGCATTATCTTCAGCAGAGGATGAAAATGGGCTTAGGCATGTGATGTTATGTCGCGTGATATTGGGCAACATGGAAACTGTTTGTGCTGGTTCACAACAGTTTCATCCATGCTCTAGGGAGTATGACTCTGGAGTGGATGATGTTTCAGCGCCTAGAAGATATATCATTTGGAGTGCTTACATGAATTCTCACATTCTTCCCAGTTACATCATAAGCTTTAGGGCCCCTCTGAAGGGAGTTCCTCGAAGAATTCAGGCGAATTTAGTAAAACCCACCTCCCCATGGATGAAGTTTCACACTCTATTGTCCGTACTTTCAAAGGTTTTACCTCCTCACAAGATGACCCAGATTTCCAAATATCACTGTGATTTCCATAGGAAAAAAATTACGAGGCAGCAACTGGTAAAAAGATTAAGACAGATAGCCGGAGACGAGATGTTAACCAGAGTGATCAAACTTTACAGAACTAAGGATCAGACCTCCTGTGTGCTAGTTCCATGA 783 43.17 MGPIGKGTDVVSIHKNSHSTLTGQARFESFRIFSQAVGKKCGGDANINYAWYGASRGEIYDIISHGFSRLQRPKAGELYGFGVYLSSAKFSIDCALSSAEDENGLRHVMLCRVILGNMETVCAGSQQFHPCSREYDSGVDDVSAPRRYIIWSAYMNSHILPSYIISFRAPLKGVPRRIQANLVKPTSPWMKFHTLLSVLSKVLPPHKMTQISKYHCDFHRKKITRQQLVKRLRQIAGDEMLTRVIKLYRTKDQTSCVLVP* 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8010190 8012475 + Vvi1g701 Vvi1g701 769901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g701 260 Gene3D - 1 169 - -
Vvi1g701 260 ProSiteProfiles RST domain profile. 183 254 IPR022003 -
Vvi1g701 260 SUPERFAMILY ADP-ribosylation 39 172 - -
Vvi1g701 260 Pfam Poly(ADP-ribose) polymerase catalytic domain 35 123 IPR012317 GO:0003950
Vvi1g701 260 ProSiteProfiles PARP catalytic domain profile. 1 190 IPR012317 GO:0003950
Vvi1g701 260 Pfam RCD1-SRO-TAF4 (RST) plant domain 184 249 IPR022003 -
Vvi1g701 260 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO4-RELATED 1 251 IPR044964 -
Vvi1g701 260 PANTHER INACTIVE POLY [ADP-RIBOSE] POLYMERASE SRO2-RELATED 1 251 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g701 - - - vvi:100852765 533.102
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g701 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004588 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 2 2 42