Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g704 ATGAGAAATCAGAGATTCAGGATTATCAATGAGGAAAAGGATGAGTTGGCATCTGTTTGTTCAGTGGATTCCAGCACTAGTTGCTCCCCATTTGAATCTGCTTGGCCCACCTCCTTTATGACCGCTAGTGAACATTGTATCACTGTGCATGCTGTTACAAAGGCTTCTCCTTCTCCTATAATCTACTGCACAGAGAATGCACATCATGATAAACATATTTCACATATCGAAGTTTCTGATTCAGAACCTGGACATTCAAAGTCATGCAGTGAGACAGCAGTATCCAAGAAACTGCAAGATGTACACATATCAGCACGGTTGATGGAGGATTTTCTTGAACTTGCTAGAGACAACACAAAGAATGATCTGGAGACTTGTGGGATTCTTGGTGCTTTCCTTAAAATGGGGACCTTCTATGTAACTACTCTGATAATACCCAAGCAGGAATCAACTTCCAACAGTTGTCAGGCTATAAAAGAGGAGGAGATTTTTGCCATACAAAATGAACACTCCCTTTTTCCTGTAGGATGGATCCATACACATCCTTCTCAGAGTTGTTTCATGTCATCAATAGATTTGCACACGCAATACTCATATCAGGTGATGGTGCCTGAGGCTTTTGCCATTGTCATGGCTCCAACTGATACCTCAAGGAGCTATGGCATATTCCGGCTGTCTGACCCAGTTGGAATGAGTGTTCTGAAAGACTGCCCAGAGGAGGGATTTCATCATCACAATGAACCAGCAGATGGGGGTCCCATTTATGAGCACTGCTCTAATATTTATATAAATTCAAATCTCAGATTTGAAATATTTGACTTGCGATGA 828 41.67 MRNQRFRIINEEKDELASVCSVDSSTSCSPFESAWPTSFMTASEHCITVHAVTKASPSPIIYCTENAHHDKHISHIEVSDSEPGHSKSCSETAVSKKLQDVHISARLMEDFLELARDNTKNDLETCGILGAFLKMGTFYVTTLIIPKQESTSNSCQAIKEEEIFAIQNEHSLFPVGWIHTHPSQSCFMSSIDLHTQYSYQVMVPEAFAIVMAPTDTSRSYGIFRLSDPVGMSVLKDCPEEGFHHHNEPADGGPIYEHCSNIYINSNLRFEIFDLR* 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8038364 8044353 - Vvi1g704 Vvi1g704 769904

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g704 275 PANTHER AMSH-LIKE PROTEASE 31 275 - -
Vvi1g704 275 SUPERFAMILY JAB1/MPN domain 101 231 - -
Vvi1g704 275 PANTHER FI19924P1 31 275 - -
Vvi1g704 275 CDD MPN_AMSH_like 98 275 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Vvi1g704 275 ProSiteProfiles MPN domain profile. 101 229 IPR037518 -
Vvi1g704 275 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 97 204 IPR000555 GO:0005515|GO:0008233|GO:0008237
Vvi1g704 275 Gene3D Cytidine Deaminase, domain 2 79 275 - -
Vvi1g704 275 SMART pad1_6 100 228 IPR000555 GO:0005515|GO:0008233|GO:0008237
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g704 K11866 STAMBP, AMSH; STAM-binding protein [EC:3.4.19.12] - vvi:100852697 557.755
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g704 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag0643 . . . . . . . . . . . . . . . . Cma05g00011 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015210 0 0 0 0 0 0 1 1 1 0 0 1 1 0 0 1 1 1 1 0 0 0 0 1 1 0 1 0 0 1 13