Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g708 ATGGGGATAAGAAGAACAAGGTTAATGTTGGCTTCCCTGATTGTCATCATGGGAACTCTTTTGGGTTGCCCTGGTGCTGCAACCGCTAAAAGAGCTCCCACTGTTATCATTGTTGGAGCTGGCATGTCAGGGATTTCGGCTGCCAAAACATTGTCAGACGCTGGAATTAAGCGAATATTGATACTAGAAGCAACGAATAGGATAGGTGGACGCATGTACAAAGCAAACTTCTCGGGGGTGAGTGTGGAACTAGGGGCCAACTGGGTATCGGGAGTTGGGGGTCCACAAGTGAATCCCGTTTGGATTATGGCTAACAAGCTCCGACTCAAATCCTTCCTGTCTAATTTTCTGAACCTATCTTCCAACACCTATAAACCAGAGGGTGGAGTGTATGAGGAGTCAGTGGCAAGAAAGGCGTTTGAGGTGGCTGAGCAGGTGGTGGAATTTGGCACCAAGGTTTCCAAGGATTTAGCAGCACGCAAGCAACCAGATATTTCCATTTTGACATCTCAACGCCTCAAAAATTATTTTCCCAAAACACCCCTTGAGATGGTCATTGACTACTACCTCTGTGATTTTGAGAGTGCGGAGCCACCAAGAGCCACAAGCTTGCTGAACTCTGAGCCATCTTCTACATACTCCAACTTCGGTGAGGATTCTTACTTTGTCTCAGATCCAAGGGGTTATGAGAGTGTTGTTCATTATGTAGCACAGCAGTTTCTCACCACAAATGCAGCTGGACAAATCACTGATCCTCGTCTTCAACTTAAAAAGGTGGTGACTGAAATAAGCCGTTCCCCAAGGGGTGTGGCTGTCAAGACAGAGGATGGCTTGGTGCACAGAGCCGACTATGTCATTGTCTCTGTCAGTCTTGGTGTCCTTCAGAACGATCTTATCAAATTTCATCCTTCCTTGCCGCAATGGAAGATCCTTGCTTTGGACCAGTTCAATATGGCTATCTATACCAAAATATTCCTCAAGTTTCCTTACAAGTTTTGGCCGAGTGGCAATGGCACAGAATTCTTCTTGTATGCTCATGAAAAGCGTGGTTACTACCCTTTTTGGCAGCATCTAGAAAGGGAGTTTCCGGGAGAGAATGTTCTTTTAGTAACAGTTACTGATGATGAATCAAGAAGATTGGAGCAGCAATCAGATTCTGAGACCAAGGCAGAGATCATGGCTGTCTTGAGAAACATGTTTGGGAAACAAATTCCAGAAGCTACAGATATATTAGTCCCTAGATGGTTGTCAAACAGATTCTTCAAAGGCAGTTACTCCAACTGGCCAATTGGAGTTAGTCATCACCAATTCAATCAGATAAAGGCACCAGTTGGAAAGGTTTATTTCACTGGCGAGCACACTAGCGCAGCCTACTATGGTTATGTTCATGGAGCCTACTTTGCAGGTATTGACACTGCAAAACTGATGACCAGCTGCATCAAGAGAGGAGCTTGCTCTTACAACATTTGA 1470 45.03 MGIRRTRLMLASLIVIMGTLLGCPGAATAKRAPTVIIVGAGMSGISAAKTLSDAGIKRILILEATNRIGGRMYKANFSGVSVELGANWVSGVGGPQVNPVWIMANKLRLKSFLSNFLNLSSNTYKPEGGVYEESVARKAFEVAEQVVEFGTKVSKDLAARKQPDISILTSQRLKNYFPKTPLEMVIDYYLCDFESAEPPRATSLLNSEPSSTYSNFGEDSYFVSDPRGYESVVHYVAQQFLTTNAAGQITDPRLQLKKVVTEISRSPRGVAVKTEDGLVHRADYVIVSVSLGVLQNDLIKFHPSLPQWKILALDQFNMAIYTKIFLKFPYKFWPSGNGTEFFLYAHEKRGYYPFWQHLEREFPGENVLLVTVTDDESRRLEQQSDSETKAEIMAVLRNMFGKQIPEATDILVPRWLSNRFFKGSYSNWPIGVSHHQFNQIKAPVGKVYFTGEHTSAAYYGYVHGAYFAGIDTAKLMTSCIKRGACSYNI* 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8096450 8100142 + Vvi1g708 Vvi1g708 769908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g708 489 PRINTS Flavin-containing amine oxidase signature 34 53 IPR001613 GO:0016491
Vvi1g708 489 PRINTS Flavin-containing amine oxidase signature 427 449 IPR001613 GO:0016491
Vvi1g708 489 PRINTS Flavin-containing amine oxidase signature 458 475 IPR001613 GO:0016491
Vvi1g708 489 Gene3D - 35 474 IPR036188 -
Vvi1g708 489 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 23 - -
Vvi1g708 489 SUPERFAMILY FAD/NAD(P)-binding domain 32 477 IPR036188 -
Vvi1g708 489 PANTHER FLAVIN MONOAMINE OXIDASE 15 489 - -
Vvi1g708 489 Gene3D - 115 433 - -
Vvi1g708 489 PANTHER - 15 489 - -
Vvi1g708 489 Pfam Flavin containing amine oxidoreductase 42 475 IPR002937 GO:0016491
Vvi1g708 489 SUPERFAMILY FAD-linked reductases, C-terminal domain 318 426 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g708 K13366 MPAO, PAO1; polyamine oxidase [EC:1.5.3.14 1.5.3.16 1.5.3.-] - vvi:100244793 965.296
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g708 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0021172 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 4