Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g71 ATGGAGAATTTGCTCAAGCAAATCAGGGCGAGATTTCCTGGTGCAGGGGAAGGAAACAAAGAAGCAGGCAGCAGTAGAGAGCGAAAAATTCCACTCCAAAGAACTCAGACTTTCAAAGGAGAAAGGAAGGGCCTGAGCTGGCTCAGTAGACAATTCGCTAGCAGAATGAGCCGGGGTCATGATTTGGAGAATGATTCTGAGTATGCAACTGCAGTGGCTGCAGCTGCATATGCCGTTCACTCGCTGGAAGAAACCAGAATCCCAGATCAGAAAAAGAAGAGTGAAGGCCCTGAACCTTCTCCAACCAGGGCCATAAGCAAAAAGGAAGGAACTACCTCTGCAGTTCTAGATCCTGGTAGATCATCCAGGCGACTTTCAGGTGAAGCTTCACTCAGAATTTCAGATGGTAAAGAGAGGAGGGCACCAATAAAAACAGCAGAGAAGACGACTCCTCCTCCTCCTCCCCCTCCCCCTCCTCCCCCCCCATCAGTACAAAAAACTCCAACAGTAAAGTCTGCTGTTGCTCCTGCTACCTCCATGAAAAAGGCTCCAACAGAGGAGCCTTCTGCTGCTGGCGCTTCATTCAGTAAAAAACCGCTGGACAAGGCGGCCAGCAGAAAACAAGACATTGCAGCGCCAAAACCTACCCCGCCGCCACCGCCACCACCACCCCCACCACCCACCAAAGAGCCTGCAACCCGAAAAGCTCAAGCCACAAGGGGGAGACCGATTGGAGAAATAGAGATAGATGCTTGGGAGAAGGCTGAGATGGCTAAGATCAAGGAAAAGTTTGACAAGGTGAATGGCGAGATTGCCTCCTGGGCTGATAAGAAGAAGAAGAAGGCCAAGCTCAAACTGGATAAAATAGAGGGGGCATTGGATCAGAAAAGAGCGAAAGCCCTGCGGCATGATCGGACTGACATAAACATATCTAAACTGCAGGCGGCATTGGATCAGAAAAGAGCGAAAGCCCTGCGGCATTACCGAACTGACATACAAAACATTGATTATGTAGCAGGAGGGGCTAAAGCGCAGGCAGAGGAAAAGCGAAGAAATGAAGAGCTGAAAGTGAAAGAGAAGTCGAAGATCATCAGAGAGACGGGGCAATTCCCCCCGACATGCCTCTGTTTCTGA 1134 50.09 MENLLKQIRARFPGAGEGNKEAGSSRERKIPLQRTQTFKGERKGLSWLSRQFASRMSRGHDLENDSEYATAVAAAAYAVHSLEETRIPDQKKKSEGPEPSPTRAISKKEGTTSAVLDPGRSSRRLSGEASLRISDGKERRAPIKTAEKTTPPPPPPPPPPPPSVQKTPTVKSAVAPATSMKKAPTEEPSAAGASFSKKPLDKAASRKQDIAAPKPTPPPPPPPPPPPTKEPATRKAQATRGRPIGEIEIDAWEKAEMAKIKEKFDKVNGEIASWADKKKKKAKLKLDKIEGALDQKRAKALRHDRTDINISKLQAALDQKRAKALRHYRTDIQNIDYVAGGAKAQAEEKRRNEELKVKEKSKIIRETGQFPPTCLCF* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 726649 729085 + Vvi1g71 Vvi1g71 769271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g71 377 MobiDBLite consensus disorder prediction 105 119 - -
Vvi1g71 377 Coils Coil 343 363 - -
Vvi1g71 377 MobiDBLite consensus disorder prediction 130 145 - -
Vvi1g71 377 SUPERFAMILY Formin homology 2 domain (FH2 domain) 217 324 - -
Vvi1g71 377 Coils Coil 279 299 - -
Vvi1g71 377 MobiDBLite consensus disorder prediction 21 36 - -
Vvi1g71 377 Pfam Remorin, C-terminal region 247 303 IPR005516 -
Vvi1g71 377 Pfam Remorin, C-terminal region 309 371 IPR005516 -
Vvi1g71 377 MobiDBLite consensus disorder prediction 84 98 - -
Vvi1g71 377 PRINTS Proline rich extensin signature 149 161 - -
Vvi1g71 377 PRINTS Proline rich extensin signature 163 184 - -
Vvi1g71 377 PRINTS Proline rich extensin signature 184 200 - -
Vvi1g71 377 PRINTS Proline rich extensin signature 214 231 - -
Vvi1g71 377 MobiDBLite consensus disorder prediction 147 166 - -
Vvi1g71 377 PANTHER OS02G0116800 PROTEIN 310 376 - -
Vvi1g71 377 PANTHER OS02G0116800 PROTEIN 3 309 - -
Vvi1g71 377 MobiDBLite consensus disorder prediction 1 41 - -
Vvi1g71 377 MobiDBLite consensus disorder prediction 83 247 - -
Vvi1g71 377 MobiDBLite consensus disorder prediction 212 231 - -
Vvi1g71 377 PANTHER REMORIN FAMILY PROTEIN 310 376 - -
Vvi1g71 377 PANTHER REMORIN FAMILY PROTEIN 3 309 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g71 - - - vri:117923525 634.409
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g71 . . Bda01g02133 . . . . . . . . . . Car18g01030 . Cpe09g00209 . . . . . . . . . . . . . . . . Cone19ag0916 . Cone9ag0555 . . . . . . . . . Bpe02g02322 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009173 1 2 0 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 0 1 1 1 1 1 1 2 2 1 34