Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g713 ATGCGATCAAGAGCTGCTATCAATCCAAAATTTGGAATTGTACTTAAAGTTATGATTCACTTTGTGCTTCTCATTAGTCGACAAGGAAAAGTGAGGTTGACAAAATGGTATTCACCTTATTCTCAGAAGGAAAGAACTAAGGTAATTCGAGAGCTCAGTGGCGTAATTCTGACCCGAGGTCCTAAGCTTTGCAACTTTGTGGAGTGGAGGGGATATAAAGTTGTCTACAAAAGGTATGCGAGCCTGTATTTCTGCATGTGCATTGACCAGGATGACAATGAATTGGAGGTCCTTGAAATAATCCACCATTTCGTTGAGATACTGGACCGCTATTTTGGCAGTGTCTGTGAGCTGGATTTGATTTTTAATTTCCACAAGGCTTATTATGTATTGGATGAGCTTTTGATTGCTGGTGAACTTCAAGAGTCGAGCAAGAAGACAGTTGCACGGCTGATAGCTGCACAGGATTCGTTGGTGGAGACTGCTAAAGAGGAGGCCAGTTCGATAAGCAATATAATTGCTCAAGCCACCAAATAA 537 41.53 MRSRAAINPKFGIVLKVMIHFVLLISRQGKVRLTKWYSPYSQKERTKVIRELSGVILTRGPKLCNFVEWRGYKVVYKRYASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHKAYYVLDELLIAGELQESSKKTVARLIAAQDSLVETAKEEASSISNIIAQATK* 179
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8176318 8182598 - Vvi1g713 Vvi1g713 769913

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g713 178 ProSitePatterns Clathrin adaptor complexes small chain signature. 74 84 IPR000804 GO:0006886|GO:0016192|GO:0030117
Vvi1g713 178 Gene3D - 18 173 - -
Vvi1g713 178 CDD AP1_sigma 20 160 IPR044733 GO:0016192|GO:0030121|GO:0035615
Vvi1g713 178 PIRSF AP_complex_sigma 18 169 IPR016635 GO:0015031
Vvi1g713 178 PANTHER AP-1 COMPLEX SUBUNIT SIGMA-2 18 168 - -
Vvi1g713 178 SUPERFAMILY SNARE-like 18 156 IPR011012 -
Vvi1g713 178 Pfam Clathrin adaptor complex small chain 18 157 IPR022775 -
Vvi1g713 178 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 18 168 IPR016635 GO:0015031
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g713 K12394 AP1S1_2; AP-1 complex subunit sigma 1/2 - vvi:100251707 322.013
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g713 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001475 3 2 2 4 3 2 4 2 1 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 4 73