Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g716 ATGGTCAACATGGTGCAGAGCCTCAAGGAGAGGCTGAGGCCTCTTGTGGGATTGAAAAGCTGGGACTACTGTGTTCTTTGGAAACTAAGTGAAGATCAAAGGTTTCTGGACTGGATGGATTGTTGCTGTGCTGGAAGCGAAAACAGTACTCAAAATGGTGAAGAGGAGATTCTTTTTCCTGTTTCCAGTGTACTTCCTTGCAGGGATGCCATGTTGCAGCATCCAAGAACCAAATCTTGTGATCTTCTTGCCCAATTGCCTTCTTCTATTTCCCTAGATTCTGGCATTCATGGACAGACCTTGATTTCAAACCAACCCAGATGGCTCAACTTCTGTAATAGTTCAGATTCAAGCGTTCTCGAAGAAACAGTTGGGACCAGGCTCTTGATTCCAGTGCTGGGAGGACTAATTGAACTGTTTGTTGCTAATCAAGTAGCTGAGGATCAACACGTAGTAAACTTCGTCACAACACAGTGCAACATAATCTTGATGGAGCAGGAAGCCATGATGAATTCAAGCAATATTGATACAATCTTCTCAGTTAATGCCAATGCAGGCAATGCAGATGAGGAAAAGGATCCCAACAATCATTTCCAGGCAACAATTTCCCCAGTAACAGCATTGGAGAACTTGAATGATCTGCCATTTGACATCTCAGTTGAACGAATCCGCCTATGCAGCTCTCCCATGAACTTCTTGCAGCAATTCAGTTACACCTCTGAGAGTAGCGTCAAGAATGATATCTTCTTTGAAGGATCCGATGGCTCATTTCTTTCAGAGAAGGAGCAGCTGGGTGATGATAAGGATTCGAGTACTAAACAAATGGCAAACCAAGCTGATTCAGTATCAGACTGCAGTGATCAGATTGATGATGATGATGATTTGAAGTACCGAAGGAGGACTGGAAAAGGGACTCAATCAAAAAACTTGGTCGCTGAGAGGAGGCGAAGGAAGAAGCTTAATGATAGACTCTATGCGCTTCGTGCTTTGGTTCCCAAAATATCTAAGTTGGATAGAGCTTCAATTCTGGGTGATGCAATAGAATTTGTGAAGGAGTTGCAGAAACAAGCAAAGGATCTTCAAGATGAGCTGGAAGAGCATTCAGACGATGAAGGGGGGAAGATTAATGCAGGCATCAACAGCAACCATAACAATGTCCAATCTGAAATTCTGAACAATGATGGATCAGGAGTTAACATTGGGCTCCCTAAGCAAAACCATGAAACTGATCAAATCAACAATGACAAAGCACAGCAGATGGAGCCCCAAGTGGAAGTGGCTCAGATAGAAGGCAATGAGTTCTTCGTTAAGGTGTTTTGTGAGCACAAGGCTGGCGGGTTTGCGAGGCTGATGGAGGCTCTGAGCTCTCTAGGCTTGGAAGTGACAAATGCAAATGTAACAAGCTGCAAAGGCCTGGTTTCTAATGTGTTCAAAGTAGAGAAGAGGGACAGTGAGATGGTTCAAGCTGACCATGTCAGGGACTCCTTGCTCGAGTTGACAAAAAGCCCATCTGAAAAATGGTCTGATCAGATGGCTTACCCTTTGGAAAATGGCGGAGGCTTGGACTTTCACCACCACCACTACCACCTTCACAGCCATCTTCTCAGTTCTCACCACCTCCACCACCATCAGAATTAG 1638 44.51 MVNMVQSLKERLRPLVGLKSWDYCVLWKLSEDQRFLDWMDCCCAGSENSTQNGEEEILFPVSSVLPCRDAMLQHPRTKSCDLLAQLPSSISLDSGIHGQTLISNQPRWLNFCNSSDSSVLEETVGTRLLIPVLGGLIELFVANQVAEDQHVVNFVTTQCNIILMEQEAMMNSSNIDTIFSVNANAGNADEEKDPNNHFQATISPVTALENLNDLPFDISVERIRLCSSPMNFLQQFSYTSESSVKNDIFFEGSDGSFLSEKEQLGDDKDSSTKQMANQADSVSDCSDQIDDDDDLKYRRRTGKGTQSKNLVAERRRRKKLNDRLYALRALVPKISKLDRASILGDAIEFVKELQKQAKDLQDELEEHSDDEGGKINAGINSNHNNVQSEILNNDGSGVNIGLPKQNHETDQINNDKAQQMEPQVEVAQIEGNEFFVKVFCEHKAGGFARLMEALSSLGLEVTNANVTSCKGLVSNVFKVEKRDSEMVQADHVRDSLLELTKSPSEKWSDQMAYPLENGGGLDFHHHHYHLHSHLLSSHHLHHHQN* 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8215665 8218166 - Vvi1g716 Vvi1g716 769916

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g716 545 MobiDBLite consensus disorder prediction 261 314 - -
Vvi1g716 545 Gene3D - 294 369 IPR036638 GO:0046983
Vvi1g716 545 CDD ACT_UUR-ACR-like 436 499 - -
Vvi1g716 545 MobiDBLite consensus disorder prediction 270 284 - -
Vvi1g716 545 SMART finulus 310 359 IPR011598 GO:0046983
Vvi1g716 545 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 97 507 - -
Vvi1g716 545 CDD bHLH_AtAMS_like 307 375 - -
Vvi1g716 545 Pfam Helix-loop-helix DNA-binding domain 311 354 IPR011598 GO:0046983
Vvi1g716 545 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 306 367 IPR036638 GO:0046983
Vvi1g716 545 ProSiteProfiles ACT domain profile. 435 510 IPR002912 -
Vvi1g716 545 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 8 156 IPR025610 -
Vvi1g716 545 Coils Coil 343 370 - -
Vvi1g716 545 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 304 353 IPR011598 GO:0046983
Vvi1g716 545 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 97 507 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g716 - - - vvi:100251619 991.49
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g716 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006375 1 1 2 2 1 1 2 1 1 1 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14528 PF14215 bHLH-MYC_N 2.00E-23 CL0161 Vvi TF