Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi1g719 | ATGCGCCTCCTGGTCCACCTCCATTGCGTTCAATATGTCAACACAAGGCTCCTGTATTTGGAAAGCCCCCCAAGGTGGTTCAGCTATGTTGAGCTGGAGCTTGCTACTGGTGGATTTTTACAAGCTAATTTCTTGGCAGAAGGCGGGTTTGGATCTGTCCACAGAGGGGTCCTACCTGATGGCCAAGCAGTTGCTGTGAAGCAATACAAATTGGGTAGTTCTCCGGGTGATGTTGAATTTTGCTCAGAAGTGGAAGTCCTGAGCTGTGCTCAGCACCGAAAAGTTGTTATGCTGATTGGGTACTGTATAGAAGACAGAAGAAGGTTGCTAGTTTATGAATATAGATGCAATAGCTCACTGGATTCTCATCTATATGGACGCCATCGAGATCCACTAGAATGGTCTACTGGAGAAAAAGTTGCTGTTGGAGCTGCTCGAGGTCTGCGTTACCTTCATGAAGAATGCAGAGTGGGTTGCATTGTCCACCGTGACATGCGACCCAACAACATCCTCATCACCCATGATTTTGAGCAACTGGTTGGGGATTTTGGCTTAGCTAGGTGGCAGCCTGATGGAGACACGGGTGTGGAAACAAGAGTAATTGGAACATTTGGGTATTTGGCTCCAGAATATGCTCAAAGTGGCCAAATCACAGAAAACGCTGATGTATATTCTTTTGGGGTTGTCTTGGTGGAGCTTGTCATAGCATGGACGAAAAGCTGTGGACCTTAA | 732 | 46.86 | MRLLVHLHCVQYVNTRLLYLESPPRWFSYVELELATGGFLQANFLAEGGFGSVHRGVLPDGQAVAVKQYKLGSSPGDVEFCSEVEVLSCAQHRKVVMLIGYCIEDRRRLLVYEYRCNSSLDSHLYGRHRDPLEWSTGEKVAVGAARGLRYLHEECRVGCIVHRDMRPNNILITHDFEQLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITENADVYSFGVVLVELVIAWTKSCGP* | 244 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8296331 | 8298549 | + | Vvi1g719 | Vvi1g719 | 769919 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi1g719 | 243 | SUPERFAMILY | Protein kinase-like (PK-like) | 13 | 235 | IPR011009 | - | |
Vvi1g719 | 243 | PANTHER | OS01G0253100 PROTEIN | 21 | 236 | IPR045271 | GO:0004714|GO:0006468 | |
Vvi1g719 | 243 | Gene3D | Transferase(Phosphotransferase) domain 1 | 116 | 240 | - | - | |
Vvi1g719 | 243 | Pfam | Protein tyrosine and serine/threonine kinase | 44 | 234 | IPR001245 | GO:0004672|GO:0006468 | |
Vvi1g719 | 243 | PANTHER | KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN | 21 | 236 | - | - | |
Vvi1g719 | 243 | ProSiteProfiles | Protein kinase domain profile. | 39 | 243 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vvi1g719 | 243 | Gene3D | Phosphorylase Kinase; domain 1 | 6 | 114 | - | - | |
Vvi1g719 | 243 | ProSitePatterns | Tyrosine protein kinases specific active-site signature. | 160 | 172 | IPR008266 | GO:0004672|GO:0006468 |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
76519 | PF07714 | PK_Tyr_Ser-Thr | 1.30E-36 | CL0016 | Vvi | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi1g719 | - | - | vvi:100243170 | 448.743 |