Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g721 ATGACAGTTGACACCATCCCTTATTCTTTAAAAGTTCCTAATATTTGTAGAACATCAGCTTCACTTTGTAGGATGTTGGTGGTCAGGATAATTTATTGCGTGTGTGTTTGTGGACAATATTTCTGGTTTGAGGCTAAGTTGTGGTGTGACTGCCCTTTCTGGCTAGATGACTTGCGAGATTCCTGTGTTTGTGAATGCCTTGAAAGTGAGTTCCCTGAATCATTTCAGAAGCCCTTTAATCATGACTTTTCATCAAAAGATCTCATTAATCAAGAGGGAAAGCCGCAGGCTGTTGTCAACCATACACTAGATGCCAAAGCTTTCAAAGGCTGGGTAGAAGTAAACAATCCATGGACAAATGATGACGAGACTGACAATGGTGGATTCTTTTTAGTCAATAACACTGTATCTTTTTTGCCTTTAAGTTACTCTTATGGTTTTGATGGTTCATTTTCATTTGCAGCAGAGATGACATCTGAATTAGTGTTGGGGTTCCTAATCAGGGATTTTGGTGGTCAGGATAATATTCCTCCATTGTGGAGGCAATATTTCCAAAACACTCAAGGTCTTATGTTTGTGGTGGATAACAATGATAGAGATCAAGTTGTTGAGGTCAGGAATGAGTTGCATAGGATGTTGAATGAAGATGAGCTCCATGATGCTGTGCTACTTGTATTTGGTAAGAAACAAGATCTCCCTAATGCAATGAATACTGCAAAGATAATTGATAAGCTTGGCCTCCACTCTCTCCTGTAG 756 39.42 MTVDTIPYSLKVPNICRTSASLCRMLVVRIIYCVCVCGQYFWFEAKLWCDCPFWLDDLRDSCVCECLESEFPESFQKPFNHDFSSKDLINQEGKPQAVVNHTLDAKAFKGWVEVNNPWTNDDETDNGGFFLVNNTVSFLPLSYSYGFDGSFSFAAEMTSELVLGFLIRDFGGQDNIPPLWRQYFQNTQGLMFVVDNNDRDQVVEVRNELHRMLNEDELHDAVLLVFGKKQDLPNAMNTAKIIDKLGLHSLL* 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8304389 8331824 + Vvi1g721 Vvi1g721 769921

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g721 251 SUPERFAMILY ERO1-like 40 133 IPR037192 -
Vvi1g721 251 PANTHER ADP-RIBOSYLATION FACTOR 156 250 - -
Vvi1g721 251 SMART arf_sub_2 100 250 - -
Vvi1g721 251 Gene3D - 153 251 IPR027417 -
Vvi1g721 251 Pfam ADP-ribosylation factor family 163 250 IPR006689 GO:0003924|GO:0005525
Vvi1g721 251 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 243 IPR027417 -
Vvi1g721 251 PANTHER ADP RIBOSYLATION FACTOR-RELATED 156 250 IPR024156 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g721 K07937 ARF1_2; ADP-ribosylation factor 1/2 - vvi:100855323 239.965
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g721 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004203 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 3 40