Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g723 ATGGATCTTCTTGCCAAGAGTTACACGGCAGATGATGACGACGGGCCACAGCATGAAGCAGAAGACCAAAACCTTGACAATTCATCGCCGGATTCTTCCCCAACTCGAATCGCTCTCCCCTCCAAATCCTCCGCCCCCAAGGTCGACGACACCACGCTCGCTCTCGCGATCGCCAATACAAATGACAAACCCATTGACCCTATCCAACACGTCGTCCCCTTCAATCCCACCTACGACCAGCTCTGGGCTCCCATCTATGGCCCCGCCCACCCATACGCCAAAGACGGCATCGCTCAAGGCATGCGCAACCACAAGCTAGGGTTCCGGAAGATTGAGAAAAAGAAGGAATCGGAGAGCGAGGAGAATGAGGATAGTCCGTGGGCGGGGAAGAAGGAAGGGTTGCAGACGGAATTGACGGAGGAACAGAAGAAGTACGCCGAGGAGTACGCAAAGAAGAAGGGTGAGGAGAAAGGGGCAGCCGAAAAGGGCGAATTTGTTACAGATAAGAGTACATTTCATGGGAAAGAGGAGAGGGATTATCAGGGTAGGTCTTGGATTGCACCACCCAAGGATGCTAAGGCTACAAACGATCATTGTTATATACCAAAGAGATTGGTGCATACTTGGAGTGGACACACGAAGGGTGTGTCTGCAATTCGGTTCTTCCCCAAGCATGGGCATTTGATTCTCTCAGCTGGGATGGATACCAAGGTAAAGATTTGGGATGTGTTCAATTCAGGGAAGTGTATGAGGACTTATATGGGTCACTCAAAGGCAGTTCGAGATATTTCGTTTTGTAATGATGGGACTAAGTTTTTGACTGCTGGGTATGACAAGAATATCAAGTACTGGGACACAGAAACTGGACAGGTGATATCCACCTTCTCAACTGGGAAGATCCCTTATGTTGTTAAGCTGAATCCAGATGATGATAAGCAGAATATCCTATTAGCAGGGATGAGTGATAAAAAGATTGTTCAGTGGGATATGAATACAGGGCAAATTACACAAGAGTATGATCAACATTTGGGAGCGGTAAACACCATTACATTTGTAGACAACAATAGGAGATTCGTCACTTCTAGTGATGACAAATCTCTTCGTGTTTGGGAATTTGGGATTCCTGTGGTTATAAAGTATATCAGTGAACCTCATATGCACTCCATGCCATCAATTTCTCTTCACCCAAATACAAATTGGCTTGCGGCACAGAGTTTGGACAATCAGATTCTTATTTATAGCACTAGGGAGAGGTTTCAGCTCAATAAAAAGAAGAGGTTTGCTGGTCACATTGCGGCTGGCTATGCTTGCCAAGTCAATTTCTCACCAGATGGACGGTTTGTCATGTCTGGAGATGGTGAAGGTAAATGCTGGTTTTGGGACTGGAAGAGTTGCAAAGTCTTCAGAACACTCAAGTGTCATGAAGGGGTATGCATCGGGTGTGAGTGGCATCCTTTGGAACAAAGTAAAGTAGCAACATGTGGCTGGGATGGCTTGATTAAGTACTGGGACTAA 1515 46.53 MDLLAKSYTADDDDGPQHEAEDQNLDNSSPDSSPTRIALPSKSSAPKVDDTTLALAIANTNDKPIDPIQHVVPFNPTYDQLWAPIYGPAHPYAKDGIAQGMRNHKLGFRKIEKKKESESEENEDSPWAGKKEGLQTELTEEQKKYAEEYAKKKGEEKGAAEKGEFVTDKSTFHGKEERDYQGRSWIAPPKDAKATNDHCYIPKRLVHTWSGHTKGVSAIRFFPKHGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAGYDKNIKYWDTETGQVISTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTGQITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIAAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD* 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8670275 8675422 + Vvi1g723 Vvi1g723 769923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g723 504 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 471 504 - -
Vvi1g723 504 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 339 371 - -
Vvi1g723 504 MobiDBLite consensus disorder prediction 1 25 - -
Vvi1g723 504 ProSitePatterns Trp-Asp (WD) repeats signature. 229 243 IPR019775 -
Vvi1g723 504 MobiDBLite consensus disorder prediction 26 49 - -
Vvi1g723 504 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 209 243 - -
Vvi1g723 504 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 294 IPR001680 GO:0005515
Vvi1g723 504 ProSiteProfiles Trp-Asp (WD) repeats profile. 471 504 IPR001680 GO:0005515
Vvi1g723 504 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 253 290 - -
Vvi1g723 504 Coils Coil 131 151 - -
Vvi1g723 504 ProSiteProfiles Trp-Asp (WD) repeats profile. 339 371 IPR001680 GO:0005515
Vvi1g723 504 PRINTS G protein beta WD-40 repeat signature 229 243 IPR020472 -
Vvi1g723 504 PRINTS G protein beta WD-40 repeat signature 272 286 IPR020472 -
Vvi1g723 504 PRINTS G protein beta WD-40 repeat signature 358 372 IPR020472 -
Vvi1g723 504 PANTHER PRE-MRNA-PROCESSING FACTOR 17 112 504 IPR032847 GO:0000398|GO:0071013
Vvi1g723 504 PANTHER PRE-MRNA-PROCESSING FACTOR 17 48 109 IPR032847 GO:0000398|GO:0071013
Vvi1g723 504 MobiDBLite consensus disorder prediction 110 138 - -
Vvi1g723 504 Gene3D - 189 504 IPR015943 GO:0005515
Vvi1g723 504 ProSiteProfiles Trp-Asp (WD) repeats profile. 209 243 IPR001680 GO:0005515
Vvi1g723 504 SMART WD40_4 464 504 IPR001680 GO:0005515
Vvi1g723 504 SMART WD40_4 202 242 IPR001680 GO:0005515
Vvi1g723 504 SMART WD40_4 288 329 IPR001680 GO:0005515
Vvi1g723 504 SMART WD40_4 420 461 IPR001680 GO:0005515
Vvi1g723 504 SMART WD40_4 375 414 IPR001680 GO:0005515
Vvi1g723 504 SMART WD40_4 246 285 IPR001680 GO:0005515
Vvi1g723 504 SMART WD40_4 332 371 IPR001680 GO:0005515
Vvi1g723 504 Pfam WD domain, G-beta repeat 467 504 IPR001680 GO:0005515
Vvi1g723 504 Pfam WD domain, G-beta repeat 247 285 IPR001680 GO:0005515
Vvi1g723 504 Pfam WD domain, G-beta repeat 204 242 IPR001680 GO:0005515
Vvi1g723 504 Pfam WD domain, G-beta repeat 426 461 IPR001680 GO:0005515
Vvi1g723 504 Pfam WD domain, G-beta repeat 333 370 IPR001680 GO:0005515
Vvi1g723 504 CDD WD40 205 504 - -
Vvi1g723 504 MobiDBLite consensus disorder prediction 1 49 - -
Vvi1g723 504 SUPERFAMILY WD40 repeat-like 200 504 IPR036322 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g723 K12816 CDC40, PRP17; pre-mRNA-processing factor 17 - vvi:100260455 926.391
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g723 . . . . . Bpe10g00836 Bma14g01790 Bma15g00188 . Cmo18g00805 . . . Car18g00732 Sed06g1635 Cpe09g00502 Cpe01g01528 Bhi07g01722 Tan04g1228 Cmetu10g1166 . Hepe10g1644 . . Cla05g02538 Cam05g2728 Cec05g2758 Cco05g2799 Clacu05g2729 Cmu05g2582 Cre05g2696 . . . Cone12ag0639 Lsi04g00546 Csa05g02340 Chy10g00907 Cme10g00519 Blo06g00874 Blo11g00912 Bda07g01599 . . . . . . . . Cma04g01729 . Car04g01761 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004325 3 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 2 1 42