Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g73 ATGGAAATTGATCCTACAGAACCAGAAGCCCAGATCAAGGACGAAGATCTGTTCAGAGCCGCCGATTCAGGCGATTCTTCGGTTTTTAGAGCTCTCTCTCCTCAGCAGCTTCTGAGAGCTCTCTCGCTTAGGAACGAAGATGACCGATCCCTCCTTCACGTCGCCACCTCTTTGGGTCACTTGGAGGTGGTGAAGATGTTATCGGAAGCTGATCCATCAGTAAGTGGAATAAACAGCGTTGATGAAGAAGGTTGGGCGCCACTCCACTCTGCTGCAAGCAGTGGGCATACAGAAATTGTGGAGATTTTGATTAGCAGAGGGGCTGATGTTAATTTGAAAAATGATGGAGGTCGCACTGCTCTTCACTATGCTGCCAGCAAAGGATGGTTGAAAATTGCTGAATTTCTGATTTTACACAATGCAAAGATTAATGCCAAGGATAAGGCTTATCGGTTGCACCCCATTGCATCGAGCAGCAAGCACAGGGAACTCAGCAATGTGTGA 504 47.42 MEIDPTEPEAQIKDEDLFRAADSGDSSVFRALSPQQLLRALSLRNEDDRSLLHVATSLGHLEVVKMLSEADPSVSGINSVDEEGWAPLHSAASSGHTEIVEILISRGADVNLKNDGGRTALHYAASKGWLKIAEFLILHNAKINAKDKAYRLHPIASSSKHRELSNV* 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 731576 733548 + Vvi1g73 Vvi1g73 769273

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g73 167 PANTHER REPEAT PROTEIN, PUTATIVE-RELATED 76 149 - -
Vvi1g73 167 PANTHER REPEAT PROTEIN, PUTATIVE-RELATED 45 121 - -
Vvi1g73 167 ProSiteProfiles Ankyrin repeat profile. 47 79 IPR002110 GO:0005515
Vvi1g73 167 ProSiteProfiles Ankyrin repeat profile. 83 115 IPR002110 GO:0005515
Vvi1g73 167 Pfam Ankyrin repeat 117 148 IPR002110 GO:0005515
Vvi1g73 167 Pfam Ankyrin repeats (3 copies) 18 114 IPR002110 GO:0005515
Vvi1g73 167 Gene3D - 122 165 IPR036770 -
Vvi1g73 167 ProSiteProfiles Ankyrin repeat profile. 116 148 IPR002110 GO:0005515
Vvi1g73 167 PRINTS Ankyrin repeat signature 48 63 IPR002110 GO:0005515
Vvi1g73 167 PRINTS Ankyrin repeat signature 99 113 IPR002110 GO:0005515
Vvi1g73 167 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 45 121 - -
Vvi1g73 167 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 76 149 - -
Vvi1g73 167 ProSiteProfiles Ankyrin repeat region circular profile. 83 115 - -
Vvi1g73 167 SUPERFAMILY Ankyrin repeat 17 147 IPR036770 -
Vvi1g73 167 Gene3D - 75 121 IPR036770 -
Vvi1g73 167 Gene3D - 10 74 IPR036770 -
Vvi1g73 167 ProSiteProfiles Ankyrin repeat region circular profile. 116 148 - -
Vvi1g73 167 SMART ANK_2a 47 76 IPR002110 GO:0005515
Vvi1g73 167 SMART ANK_2a 116 145 IPR002110 GO:0005515
Vvi1g73 167 SMART ANK_2a 83 112 IPR002110 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g73 K06694 PSMD10; 26S proteasome non-ATPase regulatory subunit 10 - vri:117921498 288.115
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g73 . . . . . Bpe10g00893 . Bma15g00137 . . . . . . . . . . . . . . . . . . . . . . . . . Cone6ag0546 Cone9ag0556 . . . . Blo06g00924 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009040 2 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 0 4 1 32