Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g73 ATGGAAATTGATCCTACAGAACCAGAAGCCCAGATCAAGGACGAAGATCTGTTCAGAGCCGCCGATTCAGGCGATTCTTCGGTTTTTAGAGCTCTCTCTCCTCAGCAGCTTCTGAGAGCTCTCTCGCTTAGGAACGAAGATGACCGATCCCTCCTTCACGTCGCCACCTCTTTGGGTCACTTGGAGGTGGTGAAGATGTTATCGGAAGCTGATCCATCAGTAAGTGGAATAAACAGCGTTGATGAAGAAGGTTGGGCGCCACTCCACTCTGCTGCAAGCAGTGGGCATACAGAAATTGTGGAGATTTTGATTAGCAGAGGGGCTGATGTTAATTTGAAAAATGATGGAGGTCGCACTGCTCTTCACTATGCTGCCAGCAAAGGATGGTTGAAAATTGCTGAATTTCTGATTTTACACAATGCAAAGATTAATGCCAAGGATAAGGCTTATCGGTTGCACCCCATTGCATCGAGCAGCAAGCACAGGGAACTCAGCAATGTGTGA 504 47.42 MEIDPTEPEAQIKDEDLFRAADSGDSSVFRALSPQQLLRALSLRNEDDRSLLHVATSLGHLEVVKMLSEADPSVSGINSVDEEGWAPLHSAASSGHTEIVEILISRGADVNLKNDGGRTALHYAASKGWLKIAEFLILHNAKINAKDKAYRLHPIASSSKHRELSNV* 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 731576 733548 + Vvi1g73 Vvi1g73 769273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g73 167 PANTHER REPEAT PROTEIN, PUTATIVE-RELATED 76 149 - -
Vvi1g73 167 PANTHER REPEAT PROTEIN, PUTATIVE-RELATED 45 121 - -
Vvi1g73 167 ProSiteProfiles Ankyrin repeat profile. 47 79 IPR002110 GO:0005515
Vvi1g73 167 ProSiteProfiles Ankyrin repeat profile. 83 115 IPR002110 GO:0005515
Vvi1g73 167 Pfam Ankyrin repeat 117 148 IPR002110 GO:0005515
Vvi1g73 167 Pfam Ankyrin repeats (3 copies) 18 114 IPR002110 GO:0005515
Vvi1g73 167 Gene3D - 122 165 IPR036770 -
Vvi1g73 167 ProSiteProfiles Ankyrin repeat profile. 116 148 IPR002110 GO:0005515
Vvi1g73 167 PRINTS Ankyrin repeat signature 48 63 IPR002110 GO:0005515
Vvi1g73 167 PRINTS Ankyrin repeat signature 99 113 IPR002110 GO:0005515
Vvi1g73 167 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 45 121 - -
Vvi1g73 167 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 76 149 - -
Vvi1g73 167 ProSiteProfiles Ankyrin repeat region circular profile. 83 115 - -
Vvi1g73 167 SUPERFAMILY Ankyrin repeat 17 147 IPR036770 -
Vvi1g73 167 Gene3D - 75 121 IPR036770 -
Vvi1g73 167 Gene3D - 10 74 IPR036770 -
Vvi1g73 167 ProSiteProfiles Ankyrin repeat region circular profile. 116 148 - -
Vvi1g73 167 SMART ANK_2a 47 76 IPR002110 GO:0005515
Vvi1g73 167 SMART ANK_2a 116 145 IPR002110 GO:0005515
Vvi1g73 167 SMART ANK_2a 83 112 IPR002110 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g73 K06694 - vri:117921498 288.115