Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g730 ATGTCCTATCAGATTCCTCCGCCGGGGCAGCCTCCAAACCCAGCTTTGAGACCGTACGCGCCTGTGCCGAATGGCTATCCTGCTATTCCAGCACCTGGTCCTCAAGGGGCTGTGCCTCCTCCGGGAGTTCCTCGCTATCCCTCTCCTTATGCAACTATGGTTCGTCCTGCATTTCCTCCTCGTCCACCAGGAGCAATTGGGATGCTTCCTGCACTGTCACGCCCTCCTGTTCCAGGGATGCCAGGAGTTCGTCCAATTATGCCTCCTGTTGTTAGACCAGCTATTGTCCCTGTTGCTGCACCAACAGAGAAACCACAAACCACGGTTTATGTTGGCAAAATAGCATCAACAGTGGAAAATGATTTTATTCTCTCTCTCCTTCAAGTTTGTGGACCTGTCAAGAGTTGGAAACATGCTCAATATCCCATAGATGGAACTCCCAGAGGCTTGGGATTCTGTGAATTTGAGTCTCCTGAAGGGGTTCTCCGTGCTTTACGCCTGCTGACTAAATTCAATGTTGATGGGCAGGAACTGGTGTTAAATGTTAATCAAGCAACAAGAGAATATCTAGAGCGGTATGTTGAAAAGAAAACTGAAAACTCAAAGAAACCACAAGAATCTGACATTGAAGGATCTGAGAAAGAGCAAGAAAGTGTACCAGGTGTTGAGCAGAATGAAATTCTAAAGCCTTCTTTAGAGGACTCAAAGAAGGATGGAAATGAGTTGGTGAACAAAGAAAATCAAGACAATGCTTCCTTTGGGATTGTGACTGATGAAGATAGAGAAGCTGATCGTGAGGCTTTGGAGAAGCTTACGAGTATGATGGAAGAGAGGATAAAGACAAAACCACTTCCTCCCCCACCCGCACAAGGGGCTGCAGATGGTTCTGAAAACACAAACTCAGAACTGCCTACTAAGTCAAGAGATTCAGATGTGGATGTAATGAGAAATGATGCAGCAGAAGATGATGAAACTACTAGTGAAAACAAACCTAAAAGTGATCAGGAGAGGCTTGAAAGAAGTTCACCTGACAGGAGTAGAAGATATGACAGGAGGAGCAGAGAGAGGGACAGAGACCGGGAGCTAAAACGGGAAAAGGAACGGGAATTTGACAGACTTGAGAGAGAAAGGGAGCGAGAACGAGTTAGGAGAGAGAAGGAGCGAGAGATAAAAATTGAGAGGGCTGAAAATTTATATAGGGAGCGTGTCAAGGAGTGGGAGTATAGAGAAAGAGAGAAAGAGTATCAGCGACAGCATGAAAAGGAGAGGGAAAAAGAAAGGGAACGGGAGCGGAGGAGGGAAATCTCAAATCAGGAACGTGACAATGACGAAGATGATTCCAGAAAAAGGAGGCGCAGGAGTAGTGAGGTAGAAGAGAAGAGAAAGAAGAGGCAAAGAGAAAAGGAGGAAGACTTGGCTGACAGATTAAAAGAGGTGGAAGAAATTGCTGAGACCAATAGGAGGGCAAGTGAGGAGGAGCAACAGCAGCAGCAGGAGCAACAAAACAATGCAGTCAAGCTTTTGGCTCTTCATGCAACTACCGGAAGTGAAAAAGAAGTTCTGACTGATGAAACTGATGCACAAAATAAAGATAAAGCTGTTGAACAGGCTTATGAGGGTGATTCAAGTCATCAGAACCATATTGGTGATGGAATATTACAAAACGGCACTGGAGATGAATCGGCCATGGCATCGCTTGCTGCATCAGATGTGCGGCAGAGTAGCAATCTCCCTGCCAGAAAATTGGGTTTTGGTCTAGTTGGTTCTGGAAAGCGAACTGCTGTCCTGTCTGTTTTTCATGAGGAGGAGGATGATGATGCACATAAGGAGAAAAAGATGAGACCTCTGGTTCCCATTGATTATTCGACTGAAGAATTGCAGGCTGTCCAACCTACCATTTCTGGGCCATCACCATCAAATTTGGTTGCAGCAGCAGAATTTGCTAAGCGCATCACCAATGTTAAAGATGACAAGTCTGATATAGAGAAAGAAAGAAATAGACGTGCTTATGATAGGTCAAGCCACCGTGATAGGAATGATGAGGATATTAATCGTGCCAGAGATGAGAACAGAGAGAAGTTTCTTGATCGGGACAGGGATCGAGAACATGGACCAGAAAAATTGAGGACTCCAGATAATAAGAAGCTTTTAGATGCCAAACAATTGATTGATATGATCCCTAAGACTAAGGAGGAGTTATTCTCATATGAGATAAATTGGGGCGTGTATGATAAGCATGAGCTACATGAGAGAATGAGGCCTTGGATCTCAAAGAAGATTACAGAGTTTTTAGGAGAGGAAGAAGCTACGCTTGTGGATTACATTGTATCCAGCACTCAAGAACATGTTAAGGCATCCCAAATGCTGGAGCTACTTCAATCCATCTTAGATGATGAAGCAGAAATGTTTGTGCTCAAGATGTGGAGGATGCTTATCTTTGAAATTAAGAAAGTAGAGACAGGTCTCTCTTTGAGGTCAAAAACTTGA 2487 44.43 MSYQIPPPGQPPNPALRPYAPVPNGYPAIPAPGPQGAVPPPGVPRYPSPYATMVRPAFPPRPPGAIGMLPALSRPPVPGMPGVRPIMPPVVRPAIVPVAAPTEKPQTTVYVGKIASTVENDFILSLLQVCGPVKSWKHAQYPIDGTPRGLGFCEFESPEGVLRALRLLTKFNVDGQELVLNVNQATREYLERYVEKKTENSKKPQESDIEGSEKEQESVPGVEQNEILKPSLEDSKKDGNELVNKENQDNASFGIVTDEDREADREALEKLTSMMEERIKTKPLPPPPAQGAADGSENTNSELPTKSRDSDVDVMRNDAAEDDETTSENKPKSDQERLERSSPDRSRRYDRRSRERDRDRELKREKEREFDRLERERERERVRREKEREIKIERAENLYRERVKEWEYREREKEYQRQHEKEREKERERERRREISNQERDNDEDDSRKRRRRSSEVEEKRKKRQREKEEDLADRLKEVEEIAETNRRASEEEQQQQQEQQNNAVKLLALHATTGSEKEVLTDETDAQNKDKAVEQAYEGDSSHQNHIGDGILQNGTGDESAMASLAASDVRQSSNLPARKLGFGLVGSGKRTAVLSVFHEEEDDDAHKEKKMRPLVPIDYSTEELQAVQPTISGPSPSNLVAAAEFAKRITNVKDDKSDIEKERNRRAYDRSSHRDRNDEDINRARDENREKFLDRDRDREHGPEKLRTPDNKKLLDAKQLIDMIPKTKEELFSYEINWGVYDKHELHERMRPWISKKITEFLGEEEATLVDYIVSSTQEHVKASQMLELLQSILDDEAEMFVLKMWRMLIFEIKKVETGLSLRSKT* 829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8775790 8787091 + Vvi1g730 Vvi1g730 769930

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g730 828 Coils Coil 408 441 - -
Vvi1g730 828 MobiDBLite consensus disorder prediction 495 509 - -
Vvi1g730 828 Gene3D PWI domain 708 823 - -
Vvi1g730 828 Gene3D - 100 217 IPR012677 -
Vvi1g730 828 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 178 IPR000504 GO:0003723
Vvi1g730 828 MobiDBLite consensus disorder prediction 304 386 - -
Vvi1g730 828 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 4 827 - -
Vvi1g730 828 MobiDBLite consensus disorder prediction 1 43 - -
Vvi1g730 828 Coils Coil 459 502 - -
Vvi1g730 828 ProSiteProfiles PWI domain profile. 731 828 IPR002483 GO:0006397
Vvi1g730 828 MobiDBLite consensus disorder prediction 229 244 - -
Vvi1g730 828 SUPERFAMILY PWI domain 750 815 IPR036483 GO:0006397
Vvi1g730 828 MobiDBLite consensus disorder prediction 410 494 - -
Vvi1g730 828 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 187 IPR000504 GO:0003723
Vvi1g730 828 MobiDBLite consensus disorder prediction 410 559 - -
Vvi1g730 828 MobiDBLite consensus disorder prediction 658 713 - -
Vvi1g730 828 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 4 827 - -
Vvi1g730 828 MobiDBLite consensus disorder prediction 196 386 - -
Vvi1g730 828 MobiDBLite consensus disorder prediction 255 277 - -
Vvi1g730 828 SUPERFAMILY RNA-binding domain, RBD 101 181 IPR035979 GO:0003676
Vvi1g730 828 SMART pwi_2 744 817 IPR002483 GO:0006397
Vvi1g730 828 Coils Coil 356 390 - -
Vvi1g730 828 MobiDBLite consensus disorder prediction 517 538 - -
Vvi1g730 828 MobiDBLite consensus disorder prediction 539 559 - -
Vvi1g730 828 MobiDBLite consensus disorder prediction 196 220 - -
Vvi1g730 828 CDD RRM_RBM25 107 190 IPR034268 -
Vvi1g730 828 Pfam PWI domain 751 814 IPR002483 GO:0006397
Vvi1g730 828 SMART rrm1_1 108 181 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g730 K12822 RBM25, S164; RNA-binding protein 25 - vvi:100263874 1298.88
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g730 . . . . . . Bma14g01788 . . Cmo18g00807 . Cma18g00802 . Car18g00734 . Cpe09g00500 Cpe01g01526 Bhi07g01719 Tan04g1224 Cmetu10g0122 Lac13g0206 Hepe10g1646 . . Cla05g02535 Cam05g2726 Cec05g2756 Cco05g2797 Clacu05g2727 Cmu05g2580 Cre05g2694 Cone13ag1035 Cone19ag1026 . . Lsi04g00542 Csa05g02342 Chy10g00909 Cme10g00517 . Blo11g00910 Bda07g01597 . . . . . . . . Cma04g01727 . Car04g01759 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003580 1 6 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 1 1 1 3 5 1 47