Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g731 ATGTCTTGGCAGGTGCTCCTCAGATGTCTATTTGGTGACAAATTCATCCATTGGATTCCTAAATCAAATTCAACCTTCACTTCTATGGCTTCTCTTAGTTCCAGCATCAAATTTACTTCATACAGATTTGAAAATGAATTTCCAGTTCAGTTCGAAGATTTCTATATTCTCTCTCTGGGGAAGATTGACTCACGACCTTCATATCATAATTCTAGCCTGATATGGCCTGTAGGTTATAAATCCAGCTGGCATGATAAGATTACTGGCTCTTTTTTTGTATGTGATGTCTTGGATGACGGTGATTCTGGTCCAGTTTTCAAGGTTCGAAGATTTCCATGCTCCATGCAGCCCATTATTAATGCATCAACAGTTTTATCGATGCCAAACTTTACCCAAAATGATGTTAAAAACAAAGTGGGAAGTGACAATTCAGCTTCTTTTGGTATGGATGATGATGATGATTCCAGTATTCAGATGATATTCTCAGAGAATGACCCTCCAAATCTTGATTATGATGTTTTATCATGTTCTCAGAATGGTTTGAATGAAGATTGTGATGTTCAAACAAAGAGTAGTTCACAAACAGAATCCAATTGCCGCCTTCTACAAAGTTCTGGAAAACTTGTGCTGAGTAATTTAAGGGTGGAGGATAATATTGGTGAGTTTCTAGTAGAAGCAAGCTCATCATCTTCAGCATGGAGTAAGGTATCTCAGACTGTGGTGCATGCATGCTGTGAAGCATACAAGCAGACAGGTGTTCTCCAGTTTTGTTGCAAGCATGATCTAGATCAAATATGGACACCATATGCAACCTTGAATGCTGATGCAGCAGCATCTATTGGGTCATTAGCCAAGTTTTGCAATTTTTGTGGTCCTATTAACATTCCGTGTTGTATTCAGAATGACAGCGTGCTTGATACTTCTTGTGACGCATTGATAAAATGGTTAGACCAAGACAGATTTGGACTGGATGTTGAATTTGTACAAGAAATCATAGAACATCTTCCTGGGGTTCATGCCTGTTCAGAATATGAATTTCTGAATAGAAGAACTCACAATTCAACACCACAAACATTTAGAAGTGGGTTTCTTCTTGCAAAAAGGAAGAGTGAGGTGCAAGGTGGGGAAAAAGCAGGTAATTTATTCAAATGTAAAAGACCTAGGAAACAGGTGGTTGAAAGCCCTGTCATAAGGGATTGCTGTCCTCCTGGAAAGCCATTAAGCTTAACACTTCCTGCCGATTTGATTGGTGATGTTCTTCAGATTTGGGAGTCATTATGGCGGTTCTCCGAGGTTTTGGGGCTGGAGGAACCTATATCATTTGAAGAGCTTGAAGAGGAACTTTTGGACCCATGCTTTGATGGTTTAAATTCACTAGAAAACAAAGAAAATGGAACACAGGGTGGTAGAGATTTGTGTAGAAGTGATGGCACAAATGGATGTAACTTGTCTCTATGCAGTGCTTCTGCATCAGGTGTTTCTGGGAAGAATGCACAAGCATTAAATACAATGGAAACAGAGTCTAAGAGAGAAGCTTCTCAAGCTAGATTGGCATCTCATAACTATGGCAGATTTATTGGGGTAGCTTTGACTAAGGCTCACAGCGCACTGCTGAAAGTTCTGGTAGGTGAATTGCTATCCAAGGTTGCTGCTTTTGCTGACCCTAATTTTGATGCTGGAGAGTCTAAATCTAGACGGGGAAGGAAGAAAGATGCAGATAACTTAATTCCTGTTAAGAAAATGAAGGTTGACAAGCTCCCAATTAATGAACTTACTTGGCCAGAATTAGCTCGGAGATACATTTTAACCATCTCATCCTTGGAGGGGAAATTTGACTGTGCAGAAATTAATAGCCGCGAGGGTTGGAAAGTGTTTCGTTGCCTACAAGGTGATGGCGGGACACTTTGTGGTTCACTTACAGGAGTGGCTGGAATGGAAGCGGATGCACTGCTGCTTGCAGAGGCTACAATCAAAATCTTTGGTTCAGTGAAGAGTAAAAATGACATTCTGAGAATAGATTGCATCAAATCTGATGCAGTTGGTGCTTACAAAACTGCTGAGTTGAATGATGGTGAAATTCCAAAGTGGGCTCAAGTGTTAGAACCTGTGAGAAAGCTGCCCACAAATGTGGGAGCCAGAATTAGGAAGTGTGTCTATGATGCTTTAGACAATGATCCACCAGAATGGGCAAAGAAGATATTGAAGCACTCAATCAGCAAAGAAGTTTACAAGGGCAACGCATCAGGGCCTACCAAGAAAGCTGTTATCGCATTGCTGGCAGATGTCCACAGTGGAAATGTTCAAAGGAGACCTGACAAGAAAAGGAAAGGGAAGCGTGTTCGTTCTGCTTCTGATCTCATAATGAAACAATGCAGAACTGTTCTACGTCGTGTTGCTTCTACAGATAAAGAAAAAGTTTTCTGTAATTTGCTGGGAAGAATTATGGATCCAAATGATAACGACGATAAGGGACTTCTTGGATTTCCTGCAATGGTATCCCGTCCATTAGATTTCAGGACCATTGATCTGAGATTGGCCGTTGGAGCGTATGGTGGATCAAATGAAGCCTTCCTCGAGGATGTCCAGGAGGTTTGGCACAATATATGCATTGCTTATAGGGATTCTGATGACATCAGTTTGGCTGAAGCATTATCTAAAGATTTTGAATCATTGTATTCAAAAGAGGTTCTCACCCTCGTCCAGAAATTTATGAGTTATGCAAATGTTGAATTTTTAAATGCTGAGGCCAAGAAAGAGCTTGAAGATACCATTGCATGTGCAGATGAGATTCCCAAAGCTCCCTGGGATGAGGGCCTCTGCAAAGTGTGTGGTGTAGATAAAGATGATGACAATGTTTTATTGTGTGATGCTTGTGATTCTGAGTACCATACATATTGCTTAAACCCCCCTCTTGCTAGAATTCCTGAAGGAAACTGGTATTGTCCTTCTTGTGTTGCTGCTCAGCGTCTCAGTCAGGGCACATCACGAAGTGCTGAGGTCTTTAGCCGATGCCGAAGAAAGAGATATCAGGGAGAGTTTACTCGCACATATCTGGAAACTCTGACCCATTTGGCAACTATAATGGAAATAAAAGAGTATTGCGAGTTGAGCATAGAGGAGAGAGTATTCCTCCTAAAGTTTTTCTGTGAGGAAGTGCTGAACTCTGCTATCATTCGTGAACACCTAGAGCAATGTGCCTCTTTATCAGCTGATTTGCAGCAGAAATTACGTACACTCTCTTTAGAGCGGAGAAACCTGAAATTGAGGGAAGAAATCCTAGCTGTGAAAGTGGAAAAAGCCAACTCAGTTGGGCTTGATGGGCCTCTTAATAAAAGCAACTATTTTGCATCCTTCCCCAGTAATCTGGTATCATTAGAGGATGGTCAGCAGGAGAATGAGCAAAATGATTTCAATAAACCACCATACTGTGTACCACATGAGAATCATTTTTCTAGTACTCCTTTCTTTAGAAAAGATGACTTCAGCAGTTTAAACAAGCTACCTCTGTTTACTCCCCAGAGCCAGAAAATTAACTCGGGTGAAGGAAATGATTCCAGGAGTAACTTTAACAGCAAACTGGAGTCAGAAAAGGATGATGATAATGGTTCTGTGCTGCCTAGTGAAATTTTGCAACGTGGTATTTTGTTTGATGCCATTAGAACCAATATTTCTGAGCATGTACATGCTATGCATGTGAACTCAGAAAATATGTTACTAGACCATAATGGCATTGGTCAACCTGTTGCAATTGAATCACAAGCCTACAACCAGGAGGCAGATTCCCTGAAGAATGAGATTTCTGTTTTGCAGGATTCAATTGCAAGCTTAGAATCACAACTTCTGAAGGTGTCCATGCGGAAGGAGTTTTTGGGAAAAGATTCTGCTGGGCGCCTGTACTGGGTTTTTTCCAGGGCAGGTACATCTCCATGGGTAGTTATTGATGGGAAAAAAAAATTTAGCTCAAGGGAATTTAATATTTCCAACCGGCACATGCATGACCAGGAGTACAGCATCCCCATGTCTTTTCCATGGGTTTCTTGTCAATCCAATGATGAAATTGAAGAACTCATTCAATGGCTGAGAGATAATGAGCCAAGAGAGAGAGAGCTGTTGGAATCTATTTTGCAGTGGCAGAGAACCAAATATAAGGACTCCAACAAAGCTAAAAGTTATGTTAAGGATGAGCAACCAACTTCCTCAAAGACCAAAAATAGCGAAAGAACTCTTGATTATCTTAAGACCAGGGCTGGGACTATCCTGGAGAAGAACATGGTGAATGATGAATCTGGGAAGGGTAAGATGATGATGAACACTGATGCCTTGCAGGAGCACTCTGATGATCTAGGAATGATTGGAGCATCAAAAAGTGAAAAGCATGAGACTGTCTCTGGGTTGATTAATTTTGACAAGGAGTTGATATGCCCATTTGATATTGAGGAGATCAGTACGAAGTTCATTGTTAAAAGCTCTAATAAGGAATTGGTGCGAGAGATAGGGCTTATTGGTTCAAATGGGATCCCATCATTTCTACCAAACACATCTCCTTACTATCTTAATGACCCCACGCTAATGTTGCTGGCCAGGGAAAATGAGGTTAATCCACATAAGAAGTCCTTGATTATGGAAAATCAACTCCAACAAGGTCCAGAAAGGAATATGGCAGCCGGTATAAAGTATTATCATCCTTCCAATGATTCTACCAGAAGATGCTCTATGGATGGCATTGGTGAAGCATTTTTAGAAACTGAAAAATTGAGATTGAATTGTATAAATGGAAGAGATCAGTCCTCTAGTACAAATCAAACTTCAGAAGGGGGTTTGGGTAATTGCTGCATCATTAATGAATCTTCATTGAAACCACTAGAGGGCTGGGCTTCTCAATTTCTGAGGAAGCTTAAGATTGATCTGCTTGATATGGATGCTGCACTACCTGAAGAAGCAGTAAAGCCTTCAAATGCTAGTTTGGAAAGAAGATGTGCATGGCGTGCATTTGTTAAATCTGCCGTGTCAATATTTCAGATGGTTCAGTCAACAATTATACTAGAGAACATGATTAAGACCGAGTACTTGAGGAATGGGTGGTGGTATTGGTCATCACTCTCAGCTGCAGCCAAGATATCTAATATTTCGTCCCTTGCTCTCCGCATATACACCCTTGATGCTGCCATTGTTTATGATGGGCCCTTGCCTGGATGTAGTTCCACAGAAATTGAAAAGCTGGGCAGTGAGTCAGACAAAAAGTTGCCCATCTATCCAAATCCCACCAGTAATCCAAAATCCAACAGCAGGACAATTCAAAAAACATCCAATTCGGATTCAACTGACAGGCCCAAACCTAGAAGCAAATCAAGCAAGAAAAGGAAAGACTGA 5370 40.95 MSWQVLLRCLFGDKFIHWIPKSNSTFTSMASLSSSIKFTSYRFENEFPVQFEDFYILSLGKIDSRPSYHNSSLIWPVGYKSSWHDKITGSFFVCDVLDDGDSGPVFKVRRFPCSMQPIINASTVLSMPNFTQNDVKNKVGSDNSASFGMDDDDDSSIQMIFSENDPPNLDYDVLSCSQNGLNEDCDVQTKSSSQTESNCRLLQSSGKLVLSNLRVEDNIGEFLVEASSSSSAWSKVSQTVVHACCEAYKQTGVLQFCCKHDLDQIWTPYATLNADAAASIGSLAKFCNFCGPINIPCCIQNDSVLDTSCDALIKWLDQDRFGLDVEFVQEIIEHLPGVHACSEYEFLNRRTHNSTPQTFRSGFLLAKRKSEVQGGEKAGNLFKCKRPRKQVVESPVIRDCCPPGKPLSLTLPADLIGDVLQIWESLWRFSEVLGLEEPISFEELEEELLDPCFDGLNSLENKENGTQGGRDLCRSDGTNGCNLSLCSASASGVSGKNAQALNTMETESKREASQARLASHNYGRFIGVALTKAHSALLKVLVGELLSKVAAFADPNFDAGESKSRRGRKKDADNLIPVKKMKVDKLPINELTWPELARRYILTISSLEGKFDCAEINSREGWKVFRCLQGDGGTLCGSLTGVAGMEADALLLAEATIKIFGSVKSKNDILRIDCIKSDAVGAYKTAELNDGEIPKWAQVLEPVRKLPTNVGARIRKCVYDALDNDPPEWAKKILKHSISKEVYKGNASGPTKKAVIALLADVHSGNVQRRPDKKRKGKRVRSASDLIMKQCRTVLRRVASTDKEKVFCNLLGRIMDPNDNDDKGLLGFPAMVSRPLDFRTIDLRLAVGAYGGSNEAFLEDVQEVWHNICIAYRDSDDISLAEALSKDFESLYSKEVLTLVQKFMSYANVEFLNAEAKKELEDTIACADEIPKAPWDEGLCKVCGVDKDDDNVLLCDACDSEYHTYCLNPPLARIPEGNWYCPSCVAAQRLSQGTSRSAEVFSRCRRKRYQGEFTRTYLETLTHLATIMEIKEYCELSIEERVFLLKFFCEEVLNSAIIREHLEQCASLSADLQQKLRTLSLERRNLKLREEILAVKVEKANSVGLDGPLNKSNYFASFPSNLVSLEDGQQENEQNDFNKPPYCVPHENHFSSTPFFRKDDFSSLNKLPLFTPQSQKINSGEGNDSRSNFNSKLESEKDDDNGSVLPSEILQRGILFDAIRTNISEHVHAMHVNSENMLLDHNGIGQPVAIESQAYNQEADSLKNEISVLQDSIASLESQLLKVSMRKEFLGKDSAGRLYWVFSRAGTSPWVVIDGKKKFSSREFNISNRHMHDQEYSIPMSFPWVSCQSNDEIEELIQWLRDNEPRERELLESILQWQRTKYKDSNKAKSYVKDEQPTSSKTKNSERTLDYLKTRAGTILEKNMVNDESGKGKMMMNTDALQEHSDDLGMIGASKSEKHETVSGLINFDKELICPFDIEEISTKFIVKSSNKELVREIGLIGSNGIPSFLPNTSPYYLNDPTLMLLARENEVNPHKKSLIMENQLQQGPERNMAAGIKYYHPSNDSTRRCSMDGIGEAFLETEKLRLNCINGRDQSSSTNQTSEGGLGNCCIINESSLKPLEGWASQFLRKLKIDLLDMDAALPEEAVKPSNASLERRCAWRAFVKSAVSIFQMVQSTIILENMIKTEYLRNGWWYWSSLSAAAKISNISSLALRIYTLDAAIVYDGPLPGCSSTEIEKLGSESDKKLPIYPNPTSNPKSNSRTIQKTSNSDSTDRPKPRSKSSKKRKD* 1790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8787895 8807169 - Vvi1g731 Vvi1g731 769931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g731 1789 MobiDBLite consensus disorder prediction 1172 1204 - -
Vvi1g731 1789 ProSiteProfiles FYR domain FYRC motif profile. 206 348 IPR003889 GO:0005634
Vvi1g731 1789 Gene3D - 47 150 - -
Vvi1g731 1789 MobiDBLite consensus disorder prediction 1172 1189 - -
Vvi1g731 1789 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1020 1063 IPR028942 -
Vvi1g731 1789 MobiDBLite consensus disorder prediction 1741 1789 - -
Vvi1g731 1789 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 891 998 IPR013083 -
Vvi1g731 1789 Coils Coil 1252 1279 - -
Vvi1g731 1789 SUPERFAMILY FYVE/PHD zinc finger 931 987 IPR011011 -
Vvi1g731 1789 SMART PHD_3 939 985 IPR001965 -
Vvi1g731 1789 MobiDBLite consensus disorder prediction 1749 1772 - -
Vvi1g731 1789 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 38 1423 - -
Vvi1g731 1789 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 1426 1788 - -
Vvi1g731 1789 Pfam PHD-finger 940 985 IPR019787 -
Vvi1g731 1789 Coils Coil 1069 1089 - -
Vvi1g731 1789 ProSiteProfiles Zinc finger PHD-type profile. 937 987 IPR019787 -
Vvi1g731 1789 SUPERFAMILY Bromodomain 776 894 IPR036427 GO:0005515
Vvi1g731 1789 ProSiteProfiles FYR domain FYRN motif profile. 46 99 IPR003888 GO:0005634
Vvi1g731 1789 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1286 1378 IPR028941 -
Vvi1g731 1789 CDD PHD1_Lid2p_like 940 984 - -
Vvi1g731 1789 PANTHER OS02G0192300 PROTEIN 1426 1788 - -
Vvi1g731 1789 PANTHER OS02G0192300 PROTEIN 38 1423 - -
Vvi1g731 1789 ProSitePatterns Zinc finger PHD-type signature. 940 984 IPR019786 -
Vvi1g731 1789 Gene3D - 768 890 IPR036427 GO:0005515
Vvi1g731 1789 MobiDBLite consensus disorder prediction 1386 1407 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g731 K22768 MBD9; methyl-CpG-binding domain-containing protein 9 [EC:2.3.1.48] - vvi:100258715 3286.89
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g731 Vvi14g1378 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g731 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005094 1 2 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 3 2 1 1 2 1 2 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
14529 PF15613 WSD 3.00E-08 No_clan Vvi TR