Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g733 ATGATTTCCTTGTTTTATTTGACAGCATCAGATGATTCAGAATCTGAGGAGTTTAGATGTCTTAACATATCAATTAAGGAAATTTATTCCGCCACCAACAATCTTAGTGCATCAAACTTCATTGGTCAAGGCATAGCTGGAAAAGTGTACAGAGGCATGCTATCAAATGGTCAGCATATTGCAGTTAAGCACATATTCGACAATGAGTGTGTGGAAACATTCATCAGGGAAGTTACAAGCTTATCACATGTCAGACATCCAAACCTTGTAACTTTGCTAGGCTATTGTGAGAAAGAAGAAGAATGTTTCCTGGTTTATGAACTATGCCACAATGGGAATCTCTCAGAATGGCTATATGGTAAAGACAAAGTTCTTTCCTGGATCCTAAGACTGGAGATTGCAATTGATTGTGCTAGAGGTCTCTGGTTTCTCCACACTTATCCAGAAGGCTGCATTGTTCATCGTGACATCAAGCCAACAAATATTCTCATCAGCGCTAACTTTCACGCTAAACTCTCGGATTTTGGGTTATCTAAGGTTATGGACCTGGATCAGTCCTATGTGAGCTCAGAAGTGAGAGGAACTTTTGGTTATGTTGATCCCGAGTACCAAATAAATCATCATGTAAATTCTTCAGGTGATATTTACAGTTTTGGCATAGTACTACTGCAAATTCTCTCAGGGAAGAGGGTTCTTAACCTGAATTCGAAGAAACCAATGCCTCTAGATAAAATGGCAAGATTCCTCATGAAGGGTCGAAATATATCAGAATTTGCTGATCCTAAACTTAATGGGGAATACTCAGTGGAAGCTTTTGAACTCATATTGGAGCTAGCTTTGACATGCACAGGACTAAAGAAGCATAGGCCATCCATAGAGCAAGTGGTTATAATACTAGAAAAGGCTCTTGATATCTCAAGAAGAGTGGAGCTTACTGCACCACATTCCACACCATACATCGTTTAA 966 39.34 MISLFYLTASDDSESEEFRCLNISIKEIYSATNNLSASNFIGQGIAGKVYRGMLSNGQHIAVKHIFDNECVETFIREVTSLSHVRHPNLVTLLGYCEKEEECFLVYELCHNGNLSEWLYGKDKVLSWILRLEIAIDCARGLWFLHTYPEGCIVHRDIKPTNILISANFHAKLSDFGLSKVMDLDQSYVSSEVRGTFGYVDPEYQINHHVNSSGDIYSFGIVLLQILSGKRVLNLNSKKPMPLDKMARFLMKGRNISEFADPKLNGEYSVEAFELILELALTCTGLKKHRPSIEQVVIILEKALDISRRVELTAPHSTPYIV* 322
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8821975 8823836 + Vvi1g733 Vvi1g733 769933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g733 321 ProSiteProfiles Protein kinase domain profile. 35 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g733 321 SUPERFAMILY Protein kinase-like (PK-like) 18 299 IPR011009 -
Vvi1g733 321 PANTHER OS01G0253100 PROTEIN 9 308 IPR045271 GO:0004714|GO:0006468
Vvi1g733 321 PIRSF ILK 18 311 - -
Vvi1g733 321 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Vvi1g733 321 Pfam Protein kinase domain 39 295 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi1g733 321 Gene3D Phosphorylase Kinase; domain 1 7 108 - -
Vvi1g733 321 PANTHER OS04G0465900 PROTEIN 9 308 - -
Vvi1g733 321 Gene3D Transferase(Phosphotransferase) domain 1 109 313 - -
Vvi1g733 321 SMART serkin_6 35 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g733 - - - vvi:100248463 633.254
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Vvi1g733 Vvi14g1383 ECH
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g733 . . . . Bpe13g00493 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0019506 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 2 4
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
76520 PF00069 Pkinase 2.00E-42 CL0016 Vvi PK