Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g739 ATGAGAGTCTTGAATATAACTCCAACTTTTTCAAAGGATTCTCGGTCGAGCTCTGAGCTCAAGGGAAAAAGCTTTCAATCTCTCGGTACGCTCAAAGAGAAGATGTCCGAGTTCAAGGCAGCTCTTTCTGATCCTTTCCTGGCAGATTTGGAGGAATTGTCAGACAATGAAGCCGATCTTGCTAATGAAGATGACATGGGTGTTGGAAACATGGAAGAAGACGATGATGGGGAGATGGCAGATATTGAAGCTCTTAATTATGATGATCTGGACAGTGTCTCCAAATTACAGAAAACACAACGTTACATTGACATTATGCAGAAAGTTGAAGATGCGCTAGAGAAGGGGTCTGATATGTCAAATCATGGGATAGTTTTGGAAGATGATCCTGAATACCAGTTGATAGTGGATTGCAATGCATTGTCAGTTGATATTGAGAATGAAATTGTTATTATCCACAACTTTATCCGTGATAACTACCGTTTGAAATTTCCGGAACTTGAGTCACTTGTGCATCACCCAATTGATTATGCTCGAGTTGTTAAGAAGATTGGGAATGAAATGGATTTAACCCTTGTTGACCTCGAGGGGCTTTTACCTTCAGCTATCATTATGGTTGTTTCAGTTACTGCATCAACTACTAGTGGCAAGCCACTTCCGGAGGAAAACCTTAAAAAGACAGTTGATGCATGTGACAGAGCTCTTGCTCTAGATTTAGCTAAGAAAAAGGTCCTTGATTTTGTAGAAAGCAGAATGGGTTATATTGCGCCCAATCTTTCTGCTATAGTTGGCAGTGCTGTTGCTGCTAAACTTATGGGGACTGCTGGTGGTCTCACAGCATTAGCTAAGATGCCAGCCTGTAATGTTCAGCTTCTTGGTGCCAAGAAAAAGAACCTTGCAGGGTTTTCTACTGCAACATCCCAATTTCGGGTAGGTTATATCGAGCAAACAGAGATATTTCAGAGCACACCCCCTTCCTTGAGGATGCGAGCCTGCCGGCTTTTGGCTGCAAAATCAACACTTTCTGCACGAGTAGATTCTACAAGGGGAGATCCTACAGGGAAAACTGGAAGAACCTTGCGAGAAGAGATCCTTAAGAAGATTGAGAAATGGCAAGAGCCACCTCCTGCAAAACAACCTAAACCTCTTCCAGTTCCTGATTCTGAGCCTAAAAAGAAGAGAGGTGGTCGTCGGCTAAGGAAGATGAAGGAGAGGTATGCTATAACGGACATGAGGAAGCTGGCCAATAGGATGCAATTTGGTGTTCCTGAAGAGAGTTCTTTAGGGGATGGACTGGGGGAAGGATATGGAATGCTCGGTCAGGCTGGGAATGGGAAGTTGCGTGTATCAGTTGGTCAGAGTAAACTTGCTGCCAAAGTTGCTAAAAAGTTCAAGGAAAAGCAATATGGAAGCAGTGGTGCTACCTCAGGACTGACTTCAAGTTTGGCCTTCACACCTGTGCAGGGAATTGAGCTGTCAAATCCCCAGGCTCATGCAAATCAGCTTGGAAGTGGAACCCAAAGTACCTACTTTTCTGAAATAGGAACCTTTTCAAAGATCAAGAGGACCTGA 1572 43.64 MRVLNITPTFSKDSRSSSELKGKSFQSLGTLKEKMSEFKAALSDPFLADLEELSDNEADLANEDDMGVGNMEEDDDGEMADIEALNYDDLDSVSKLQKTQRYIDIMQKVEDALEKGSDMSNHGIVLEDDPEYQLIVDCNALSVDIENEIVIIHNFIRDNYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTSGKPLPEENLKKTVDACDRALALDLAKKKVLDFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGLTALAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEIFQSTPPSLRMRACRLLAAKSTLSARVDSTRGDPTGKTGRTLREEILKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGNGKLRVSVGQSKLAAKVAKKFKEKQYGSSGATSGLTSSLAFTPVQGIELSNPQAHANQLGSGTQSTYFSEIGTFSKIKRT* 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8867513 8886341 - Vvi1g739 Vvi1g739 769939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g739 523 SMART NOSIC_2 134 186 IPR012976 -
Vvi1g739 523 Gene3D Nop domain 256 381 IPR042239 -
Vvi1g739 523 MobiDBLite consensus disorder prediction 368 400 - -
Vvi1g739 523 PANTHER PRE-MRNA SPLICING FACTOR PRP31 41 520 IPR027105 GO:0000244|GO:0000398|GO:0046540
Vvi1g739 523 ProSiteProfiles Nop domain profile. 255 373 IPR002687 -
Vvi1g739 523 MobiDBLite consensus disorder prediction 1 22 - -
Vvi1g739 523 Gene3D - 117 255 - -
Vvi1g739 523 Pfam Prp31 C terminal domain 378 495 IPR019175 -
Vvi1g739 523 Pfam snoRNA binding domain, fibrillarin 142 370 IPR002687 -
Vvi1g739 523 PANTHER U4/U6 SMALL NUCLEAR RIBONUCLEOPROTEIN PRP31 41 520 - -
Vvi1g739 523 SUPERFAMILY Nop domain 127 373 IPR036070 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g739 K12844 PRPF31; U4/U6 small nuclear ribonucleoprotein PRP31 - vvi:100262218 908.286
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g739 . . . . . . Bma14g01786 . . . . Cma18g00806 . Car18g00738 . Cpe09g00498 Cpe01g01522 . . . . . . . Cla05g02530 Cam05g2720 Cec05g2751 Cco05g2792 Clacu05g2722 Cmu05g2576 Cre05g2690 . . . . Lsi04g00536 Csa05g02346 Chy10g00914 Cme10g00513 . Blo11g00906 Bda07g01595 . . . . . . . . Cma04g01721 . Car04g01752 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006442 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38